Protein

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Genbank accession
XYY22281.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTRVTGSYESLIRGVSEQVAHQRYPGQHWAQDNMISDPVRGLVRRWGSVMQDEAATPAVDNAATTADVQDFRETSLYLGDVEYSFMHRRRKRPEGSTAGGLVMVNKTTRKLTPVVVGPADSVTAEVLIGGINSVTSAGRFVMMAAAAKVVDHTEVVTWDKDARGVAYVTVGNYSRTYTVTVKHSNGTEYHVEYVTPASYYPGTLDTSDILVGDSAYVKKVNDRVYAYQSAVNKWIGTAAAAIVPSAIVVELRKRLVAKIKKPEDPVNDADGNPIIYGVEFPEADVGTVDNHLTFTNITELAITDGANNNTVGAVLHEVESVADLSVRHMAGKVIKVSPRMTSGGSGQAYYVKARAINSGTGWEKVVWEEAAGTLVTPGFVCLIGTMVGDTFYLASSATILKEISGVDTPGWVPSSSGDFDSQALPAMFGKTITYMRLFQDRLMLVSGSTVLLSKTGDYFNFFRASALQIANDDPIEMYALGSDDDVITDGALLDRDLLLFGNVWQYAISGREALLPANPYIAIQSSYADSNHCSPVSAGNLVFYTQPRDHKLTVQQMQTGAYAGTVSTFEVTQQLSKYLAGSPTALVATTSPSALFVRTSGLTNGVYVFSYLDAPGQTERLFDSWSRWTWAPELGPTVGITGKDGALLTVTLRKGMEGCVYVLDEFTLAGSLSDNPHLDSIRPAESAGNMARGSPIQDALSVVLDKSAGDFFLIGRAANEYDRLATEFPDFINSIKIGANFDGHVTITNPFMRDRDGKPILDGRLTLGNFKVTVVDSAAMKVFVQDLQTLDMQEVEVLNWVARAAGVWVLNTQQIMETATTTAGVYKETRACKVRFQSRSWLPFGLSAMEWSGQFFSRRN
Physico‐chemical
properties
protein length:860 AA
molecular weight: 93429,38290 Da
isoelectric point:5,36182
aromaticity:0,09186
hydropathy:-0,08442

Domains

Domains [InterPro]
IPR058003
TTP
1–631
IPR058003 IPR058003
DC_0058
STR
1–860
DC_0058
XYY22281.1
1 860
Architecture
STR
STR 1-860
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22281.1
1 860
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,8614
Central domain 201 403 204 0,1849
C-terminal 404 860 456 0,2568
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-403
C-terminal
404-860

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaP1
[NCBI] 		3446274 Viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22281.1 [NCBI]
Genbank nucleotide accession
PV763893 [NCBI]
CDS location
range 5346 -> 7928
strand +
CDS
ATGACGCGAGTGACTGGGAGTTACGAATCCCTGATCCGTGGTGTGTCGGAACAAGTGGCGCACCAGCGGTATCCCGGCCAACACTGGGCGCAGGACAACATGATTTCGGACCCAGTGCGCGGCCTTGTGCGGCGCTGGGGTTCGGTTATGCAGGACGAAGCGGCGACACCCGCAGTGGACAACGCGGCCACAACTGCTGACGTGCAGGACTTCCGGGAGACATCGCTGTACCTCGGAGACGTTGAGTACAGCTTCATGCACAGGCGGCGCAAGCGGCCCGAGGGAAGCACGGCAGGCGGTCTGGTGATGGTCAACAAGACTACCCGGAAGCTCACTCCAGTTGTCGTCGGACCTGCGGATTCGGTGACAGCGGAAGTGCTGATCGGCGGGATCAACAGCGTTACGAGTGCTGGCCGGTTCGTGATGATGGCGGCGGCGGCCAAGGTAGTTGACCACACAGAAGTGGTGACGTGGGACAAGGATGCACGCGGCGTTGCGTATGTGACGGTGGGTAACTACTCCCGGACGTACACAGTGACCGTGAAGCATTCCAACGGTACAGAGTACCACGTTGAGTACGTCACACCGGCAAGTTACTATCCGGGAACCCTCGACACCAGTGACATCCTAGTGGGCGACTCTGCGTACGTCAAGAAGGTTAACGACCGGGTGTACGCCTACCAATCCGCTGTGAACAAGTGGATCGGTACGGCGGCTGCGGCTATCGTGCCCTCGGCAATTGTTGTGGAGCTTCGAAAACGGTTGGTCGCTAAGATCAAGAAGCCGGAAGATCCTGTCAACGATGCAGACGGCAACCCGATCATCTACGGTGTGGAGTTCCCGGAGGCTGACGTGGGCACGGTGGACAACCACCTAACGTTCACGAACATCACGGAACTGGCTATCACGGACGGCGCGAACAACAACACCGTAGGCGCCGTGCTGCACGAGGTGGAGAGCGTTGCTGACCTCAGCGTGCGGCACATGGCAGGCAAGGTGATCAAGGTCAGCCCGCGCATGACCAGCGGCGGCAGCGGGCAGGCGTACTACGTCAAGGCTCGCGCTATCAACAGCGGTACTGGCTGGGAGAAAGTGGTTTGGGAGGAAGCGGCGGGAACGCTGGTGACTCCGGGATTCGTATGCTTGATCGGTACGATGGTCGGCGACACGTTCTACCTCGCAAGCTCCGCGACTATCCTCAAGGAGATCAGCGGCGTGGACACTCCGGGCTGGGTTCCTAGCTCGTCCGGTGACTTCGACAGTCAGGCGCTGCCAGCGATGTTCGGCAAGACCATCACGTACATGCGGTTGTTCCAAGACCGCCTGATGCTGGTGTCTGGCTCAACGGTGCTGCTGTCCAAGACGGGTGACTACTTCAACTTCTTCCGTGCCTCGGCATTGCAGATTGCGAACGACGACCCGATTGAAATGTACGCACTGGGCTCTGACGATGACGTTATCACTGACGGCGCGTTGCTTGACCGGGACTTGCTACTGTTCGGTAACGTGTGGCAGTACGCAATCAGCGGACGGGAAGCGCTGCTCCCTGCTAACCCGTACATCGCGATCCAGTCCAGCTACGCCGACAGCAACCACTGCTCGCCAGTGTCTGCCGGTAACTTGGTGTTCTACACTCAGCCGCGAGATCACAAGCTGACGGTGCAGCAGATGCAGACTGGCGCTTACGCCGGTACGGTCAGCACCTTTGAGGTGACGCAGCAACTGAGCAAGTATCTGGCTGGCTCGCCTACCGCACTGGTCGCCACGACCTCGCCCTCGGCACTGTTCGTACGTACCAGCGGACTTACCAACGGCGTGTACGTGTTCAGCTACTTGGACGCACCGGGCCAGACGGAACGGCTGTTCGATAGCTGGAGCCGCTGGACGTGGGCACCGGAGCTTGGGCCGACTGTCGGGATCACTGGCAAGGACGGCGCATTGCTTACGGTGACGCTGCGCAAGGGCATGGAAGGTTGCGTGTACGTGCTGGACGAGTTCACCCTCGCCGGTTCGCTGAGCGACAACCCGCATCTGGACAGTATCCGCCCAGCGGAGAGCGCAGGCAACATGGCCCGTGGTAGTCCGATTCAGGACGCACTATCGGTTGTGCTGGACAAGTCCGCTGGCGACTTCTTCCTCATTGGTCGAGCTGCTAACGAATACGACAGGCTGGCGACGGAGTTCCCGGACTTCATCAACAGCATCAAGATCGGCGCGAACTTCGACGGACACGTTACCATAACCAACCCGTTCATGCGGGACAGAGACGGTAAGCCGATCCTCGACGGGCGCTTGACCTTGGGCAACTTCAAGGTGACGGTGGTTGACAGCGCAGCGATGAAAGTCTTTGTGCAGGATCTCCAGACCTTGGACATGCAGGAAGTCGAGGTGCTGAACTGGGTGGCACGAGCCGCTGGGGTTTGGGTACTCAACACACAGCAGATCATGGAGACTGCTACCACAACCGCTGGCGTGTACAAGGAAACGCGAGCTTGCAAAGTGCGCTTCCAGTCTCGCTCGTGGTTGCCATTTGGGTTGTCGGCCATGGAATGGTCCGGGCAATTCTTTAGCCGGAGGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
596c1c937cb89a6e3716bc76fb72025782105eefbfaca513055f108028e7be9c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank