Protein

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Genbank accession
QCS36038.1 [GenBank]
Protein name
major capsid protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKGFSKLSLAPAVRKHSKMDLSSVSLLTQNIGEILPLHTLECIPGDKIPVKVQLFSRMMPLVVPSYVKASYNVMSAFVPYHQLVQSADAWLTGDRYYAGRAPKIAFYTMGDMFTTFSYCMTTGTAEEFDVSYINSAGTTVYLRYGHGSVDQYRTMKTLMSLGYRCPIGVDLRTGSNWNTVAKNIKVSAMPLLALAKVYYDHMSQSTLYQVNVLGKILNGIYSEDTNYIKQDGSLVCSFGASYDCSPRFVVNQIVQKQPSDYFTTAWQASEAPIAGTEYASNIGSMSNQIGSLNTIFEEGPSNDGVATSLAAGKYSTTLSQVALNGLDAFYRFVKRNNYTGGRAVERILARFGIKPSSLVHNVSDVVMPCQKFPIQIGDVTSTSANEADNLFLGSYAGKGIISDGNGFEYSCSDFGILITLGWISIVPMNYLGWNTHLLKNTPLQHYNPEFDGVGTQPISVSEFTNTPGSNETVSSVFGWTDRYNEYRFANDTVIGDYIAFEDMKAWFCGRDRNSAKAQQSGVVNVPIVENPYNRIFVDTNSDVDHFYISSIFDIKATRPMTGLNNSMGDLAEGDISVQRNGEQIS
Physico‐chemical
properties
protein length:586 AA
molecular weight: 64535,13210 Da
isoelectric point:5,77253
aromaticity:0,11263
hydropathy:-0,14130

Domains

Domains [InterPro]
IPR037002
ATT
13–569
IPR037002
IPR003514
STR
16–84
IPR003514 IPR003514
IPR016184
Unmapped
17–104
IPR016184
QCS36038.1
1 586
Architecture
ATT
ATT 13-569 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCS36038.1
1 586
Domain Start End Length (AA) Confidence
N-terminal 1 460 460 0,3604
Central domain 461 575 116 0,0014
C-terminal 576 586 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-460
Central
461-575
C-terminal
576-586

Taxonomy

  Name Taxonomy ID Lineage
Phage Capybara microvirus Cap1_SP_99
[NCBI] 		2584802 Viruses > Monodnaviria > Sangervirae > Phixviricota > Malgrandaviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCS36038.1 [NCBI]
Genbank nucleotide accession
MK496704 [NCBI]
CDS location
range 1 -> 1761
strand +
CDS
ATGGCTAAAGGTTTTAGTAAGTTGAGTTTGGCTCCCGCCGTGCGTAAGCATTCGAAGATGGACTTGAGTTCTGTTAGTTTGCTTACTCAGAATATTGGTGAGATTTTGCCGTTGCATACTTTGGAGTGTATTCCTGGTGACAAGATACCCGTTAAGGTTCAGTTGTTCTCTCGTATGATGCCTCTTGTAGTTCCGTCTTATGTTAAGGCTTCTTATAATGTGATGTCTGCTTTCGTTCCTTACCATCAGTTGGTACAGTCTGCTGATGCTTGGTTGACTGGTGACCGTTATTATGCTGGTCGTGCTCCTAAGATTGCGTTTTATACAATGGGTGATATGTTTACTACTTTCAGTTACTGTATGACTACTGGTACTGCTGAAGAGTTTGATGTTTCCTACATTAATAGTGCTGGTACTACTGTTTATCTCCGCTATGGTCATGGTAGCGTTGACCAATATCGTACTATGAAGACTTTGATGTCCCTTGGTTATCGTTGTCCTATTGGTGTTGATCTCCGTACTGGTTCTAATTGGAACACTGTTGCTAAGAATATTAAGGTATCTGCTATGCCATTGCTTGCTCTCGCTAAGGTATATTATGACCACATGTCTCAGAGTACACTTTATCAAGTGAATGTATTAGGAAAGATTTTGAATGGTATTTATAGCGAAGACACTAATTACATTAAACAAGATGGTTCATTGGTTTGTTCTTTCGGTGCTAGTTATGATTGTTCTCCTCGCTTTGTAGTTAATCAAATTGTACAAAAACAGCCGTCTGATTATTTTACGACTGCTTGGCAAGCTTCTGAAGCTCCTATTGCTGGTACTGAATATGCTTCTAATATTGGTTCTATGAGTAACCAAATTGGTTCTTTAAATACAATATTTGAAGAAGGTCCGTCTAATGATGGTGTTGCCACTTCTTTGGCTGCTGGAAAATACAGTACTACTCTTAGTCAGGTTGCTCTTAATGGTTTGGATGCTTTCTATCGTTTTGTGAAGCGTAATAATTATACTGGTGGTCGTGCCGTTGAGCGAATTTTGGCTCGCTTTGGTATTAAGCCTTCGTCTTTGGTACATAATGTTAGTGATGTAGTTATGCCATGTCAGAAGTTCCCAATTCAGATTGGTGACGTTACTTCTACATCTGCTAATGAAGCTGATAATTTGTTCCTTGGTAGTTATGCAGGTAAAGGTATTATCTCTGACGGTAATGGATTTGAATATTCTTGCTCTGACTTTGGTATTTTGATTACTTTAGGTTGGATTTCTATCGTGCCTATGAATTATCTTGGTTGGAATACTCATCTTTTGAAGAATACCCCGTTGCAGCACTATAACCCAGAGTTCGATGGTGTTGGTACACAGCCTATCAGTGTTTCTGAGTTTACTAATACTCCTGGTTCTAACGAGACAGTTTCTTCTGTGTTTGGTTGGACTGACCGCTATAATGAGTATCGCTTTGCTAATGATACTGTGATTGGTGATTACATTGCCTTTGAAGATATGAAGGCTTGGTTCTGTGGTCGTGATAGGAATAGTGCTAAGGCTCAACAGTCTGGTGTAGTTAATGTTCCTATTGTTGAGAACCCTTATAATCGTATTTTCGTTGACACTAATAGTGACGTTGACCACTTCTACATTTCGTCCATTTTTGACATTAAGGCTACTCGTCCTATGACTGGTTTGAACAATTCAATGGGTGACCTTGCAGAAGGTGATATCAGTGTACAGAGAAACGGTGAACAGATAAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
213bb99e6b4d9218f002228921db1d0e0a43b47c42cb2ec6a7c25a91816ed074
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse ssDNA viruses associated with Capybara (Hydrochoerus hydrochaeris) in Brazil Fontenele,R.S., Lamas,N.S., Lacorte,C., Varsani,A. and Ribeiro,S.G. 2019-08-02 — GenBank