Protein

View in Explore
Genbank accession
QDK04509.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDQEIKTVIQYPVGATEFDIPFDYLSRKFVRVSLVADENRRLLNNITEYRYVSKTRVRLLVDTTGFDRVEIRRFTSASERVVDFSDGSVLRAVDLNVSQLQSAHIAEEARDAALLAMPEDDAGNLDARNRKIVRLAPGELGTDAVNKNQLDTTLGEAGGYLADMKELDKIIRDFIENFANDPASLRGVVWVYNAGSAIGGETSVEITKPGDVLAVPCLYINGSRQDVGVTYDYDNRTKTITFKGDRALKQNDLLIAITAEGSIPLADILMSLDGAKYVMTSQGVSVEAAIRGIRGNVKSLLDLYQAEDGDDYSPAATRALAQGNALYIPVGRWTFKSTVQIPAGTTIFGSGDKSIIASPEASDAAGSALVTVLRADNVGHISLKDFKVDGGSGAAHTVKKNVRGVRFYKCNNIRVDGVEVSRTADWATSFEQCTEVYVDGYKHRRSESPLHGGRDGLHFLDCNGFMATNLDIESHDDCVGITSETLGTFDGHIDGVRGTSTIGSLVIYNEETSGGVYIPMPMRGLRIDNVFPKEGRTARQLVRVAAYADTSDARDVIISNVQGNVTASHGVHVLNVKNVFLDNVDAHVVSSSSHGVYINGCDVVRGNVSGTTSASTHDGVQVFNSKNVELDITSRGSAGNAAQINGCTNVRVVPLFSSAGAAGLRITGSTNVDVPSGTFSGTFPGLCINQTGNTNLFIAATILYDTASGRINSPVASMFMDIPAVIISAKEAADGTLTVYRAIGGTITRLATGRYQITFTNPMQTAQFTFTMTAAHPGSVRQAYAASAIGTSGLTLGVKDSAGTDTYSEYIRFIAYNY
Physico‐chemical
properties
protein length:818 AA
molecular weight: 87650,19330 Da
isoelectric point:5,44673
aromaticity:0,07335
hydropathy:-0,10709

Domains

Domains [InterPro]
DC_0778
STR
1–810
DC_0778
IPR005604
ATT
2–127
IPR005604 IPR012334
IPR011049
STR
126–153
IPR011049 PTHR31375 IPR011050
IPR011050
STR
318–518
IPR011050
IPR000743
ENZ
395–515
IPR000743
QDK04509.1
1 818
Architecture
ATT
STR
ATT 1-127 | STR 128-810 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDK04509.1
1 818
Domain Start End Length (AA) Confidence
N-terminal 1 311 311 0,9953
Central domain 312 718 408 0,9935
C-terminal 719 818 99 0,9893
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-311
Central
312-718
C-terminal
719-818

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KMI1
[NCBI] 		2589653 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella michiganensis
[NCBI] 		1134687 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDK04509.1 [NCBI]
Genbank nucleotide accession
MN052874.1 [NCBI]
CDS location
range 32028 -> 34484
strand +
CDS
ATGGACCAAGAAATTAAAACAGTCATCCAGTACCCAGTAGGGGCCACTGAGTTCGACATCCCGTTCGACTACCTGTCCCGTAAGTTTGTCCGCGTGTCTCTCGTAGCTGATGAGAACCGCCGACTACTGAATAATATTACCGAGTACCGCTACGTGTCTAAGACCAGAGTGAGACTCCTTGTGGACACGACTGGGTTCGACCGTGTGGAAATCCGCAGGTTCACATCAGCGTCAGAGCGTGTAGTGGACTTCAGCGATGGCTCGGTTCTCCGTGCAGTGGACCTGAATGTTTCACAACTACAGTCTGCACACATTGCGGAAGAAGCACGCGATGCCGCACTTCTGGCTATGCCGGAGGACGACGCTGGGAACCTCGACGCACGCAACCGTAAGATTGTCAGACTAGCTCCCGGTGAACTCGGAACAGACGCAGTGAACAAGAACCAGCTGGACACGACCTTAGGTGAGGCTGGCGGGTACCTTGCGGACATGAAGGAACTCGATAAGATTATCCGGGACTTCATCGAAAACTTCGCCAATGACCCAGCATCTTTGCGTGGGGTCGTGTGGGTGTATAACGCAGGGTCGGCTATTGGTGGAGAGACTTCTGTCGAAATCACTAAGCCGGGAGATGTTCTCGCTGTTCCGTGCCTGTATATCAACGGGTCTCGTCAAGATGTCGGAGTAACGTACGATTACGATAACCGGACCAAGACCATCACATTCAAGGGCGACCGTGCGTTGAAGCAGAACGACCTGCTGATTGCCATAACAGCTGAGGGTTCAATCCCGCTTGCTGACATCCTAATGAGCCTAGATGGTGCCAAGTACGTTATGACATCGCAGGGTGTTAGCGTAGAGGCGGCTATTCGCGGCATCCGAGGTAACGTTAAATCTCTGCTGGACCTGTATCAAGCGGAGGACGGTGATGATTACTCCCCGGCAGCGACAAGAGCGTTAGCCCAAGGCAACGCACTGTACATCCCAGTTGGGCGTTGGACATTCAAATCCACCGTACAGATTCCAGCGGGGACCACAATCTTCGGGTCTGGAGATAAGTCAATTATTGCGTCTCCAGAGGCTTCGGACGCGGCTGGTAGCGCACTAGTTACCGTACTGCGGGCAGACAACGTTGGTCATATCTCTCTGAAGGACTTCAAGGTAGACGGCGGGTCTGGCGCTGCCCACACCGTTAAGAAGAACGTTCGTGGTGTTCGCTTCTATAAGTGTAACAACATCCGAGTTGATGGAGTCGAAGTGTCTCGAACAGCAGACTGGGCGACCTCCTTTGAGCAGTGCACCGAGGTTTACGTTGATGGCTATAAGCATCGCCGCTCTGAAAGTCCGCTTCACGGTGGTCGAGACGGCCTTCACTTCTTGGACTGTAACGGGTTCATGGCGACCAATCTGGACATTGAGTCTCACGACGACTGTGTTGGTATCACCTCTGAGACGCTCGGTACGTTTGACGGTCACATTGATGGTGTTCGCGGTACGTCCACTATAGGCTCCCTCGTGATTTACAATGAGGAGACTTCTGGAGGCGTGTACATTCCGATGCCTATGCGTGGCCTTCGGATTGACAACGTGTTCCCTAAAGAGGGTCGGACAGCTCGTCAACTTGTTCGTGTTGCGGCATACGCTGATACCTCAGACGCTCGTGACGTAATCATCTCGAACGTGCAGGGTAACGTTACGGCATCCCATGGTGTTCATGTGCTGAACGTCAAGAACGTGTTCTTAGACAACGTGGACGCACATGTGGTGTCCTCAAGCTCTCACGGCGTGTATATCAATGGCTGTGATGTTGTCCGTGGTAACGTAAGCGGAACTACCTCAGCGTCTACACACGATGGGGTCCAAGTGTTCAACTCTAAGAACGTGGAACTGGACATTACCTCTCGTGGTAGTGCAGGGAACGCTGCCCAGATTAACGGCTGTACCAACGTCCGTGTTGTTCCGCTCTTCTCTTCTGCTGGAGCGGCAGGCCTGCGCATCACCGGGTCAACCAATGTGGACGTCCCATCAGGGACCTTTAGTGGTACGTTCCCCGGACTCTGTATCAACCAAACTGGTAACACAAACTTGTTCATCGCAGCGACTATCCTGTACGACACAGCGTCTGGTCGAATCAACAGCCCAGTGGCCTCCATGTTTATGGACATCCCTGCGGTTATCATTTCGGCCAAGGAGGCAGCTGACGGTACCCTTACCGTATACCGAGCTATCGGTGGGACAATCACGCGGTTGGCCACAGGTCGCTATCAGATTACTTTCACCAACCCGATGCAGACAGCTCAGTTCACCTTCACGATGACAGCTGCACATCCGGGGAGTGTTCGTCAGGCGTACGCGGCTTCCGCGATTGGCACTAGCGGTCTAACTCTTGGTGTTAAGGACTCTGCGGGCACAGACACGTACTCTGAGTACATTCGCTTCATTGCTTACAACTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
00496040a1003e721d90419574276e84d91e478a2f7c7f74d55c6ceda234c934
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7950
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomics of Klebsiella bacteriophages in the elucidation of host range specificity Ku,H., Brown,T., Kabwe,M., Chan,H.T., Petrovski,S. and Tucci,J. 2022-11-21 — GenBank