Protein

View in Explore
Genbank accession
XLV54135.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MADIKVVRIESLPATTAVTEDDYLVVQQPDLTRRVKIGDVVHVDGTVSHVISFKEGGKLNGPMDFAYFEEEDLYLRWKGEFPHTVPALSSPYADGGITDAAWMVYTDPSLREELESTIGASMIMTAEGQSVQDVMDVTVQTANDAKALAQRVDFGTVHTVGDVIHLVNFVGPAVIEEGRTTNYPSEAAGEKFLNGVVSRRDTTTVDGIFRGATSGAMYTIAVTNGVATTKRIALRDEFKRLEANNPTRTVIRAGDDLNTAGYLQLDATGRWGMWNQQTASWQPLAIEQGGTGARDAAGVRINIGAFYKQRAALEANFNINNLTGNQDGIYYQPMTANATEANGYPAGSGAGHLIVWQNNANGGTGCRQEYYPFSNVDVWYLRTYQANTNQWTAWQPMVRPRNDDTFRSHIGLGKNNSPAFGHLYLAQYSGDVKSASGILHGDKYNTDGVLEHGYRIYSEVRNDNKAWLTIHLHKGAKGSETHRYLGFREDGVLDCPKYMQVGDLTGQLTNWGLGEWIRSSGAERGFWGSKKAAKMVVWDGGMDESGNGSLEWGVYNNRKAKWEPLPQAAGGTGATTLADAQNLFKVPIAAGVKDFLTLPRTAGMEDGKYYPIIVRTDPYYAPATGTDITLVTRSSSGGDPMNCATLQCHYRTGGWTDRGDSFYGVVNFYQNEKALLGMVAPTRGKQEYVAFYAEARAFPVSIYASRNVVEVFTREQDYQVGSVTNNQDGVKFVAPLQSADLNLAVLGDNNTNTRPIVDFKGTSGFYTGGGTQWHYIGTAERYAVMSKMNMPKVELWADGIDYLCYGSPRKALFSNAGFQCASDGTDDLTNGTFTSKCGNGAGLQGQAEFRSTPEAGQVIVRDVVGSAHRFYNFNKDGTFSAPSGFVCHTGADWNNQFGNNNPSKILAGNVNGPEGSMVVGGLSVAFSGNYAFQMAGRLDQLYTRSIEQGNHRAWNKVIQHRGQGLGTSDLNDYKADREGIYHQEANANATAERHYPPGQQMAGTLIVLRNSANEGTGCVQIYKMYLGGTWERYYNNTGSGMNWSPWKRTSFPESTTAPVMPDLWLPLTSNLKPVLGEGEMVFSRPSTATYFTKRGVMAVAQANQPRFERDGLLIEGQRTNLMLNSEDPSKWGAQSQITVGNTVTNTNGTKGARFTVSNVSGVETTALNLATVPATRGADVTGAEKFCTGSIIARGGKAHQRLRVRFDMYNGSTTVFQGDAYVNLSTLEVKTTGVAAGRIKVKAERWQTAGPAWIRVVATFEAVDSDMNIGCQFQIAPPDGSQHAAGDWIDVAIPQFELGSCESSFIPTGSSPVTRAADLCKFPMTDNLAPRPFTIAATVDANWRGWGKAPNAAPRVIDTELHQSGAAFIMGFGSSANIADDGYPYCDIGGSNRRVYEMAKTRKLKIGFRIKDDGKTCSFANGLVSTETQSSWEFLAGGAFIRIGGQTATGERHLFGHIKDIRVWNSALTDTQLMMESVE
Physico‐chemical
properties
protein length:1479 AA
molecular weight: 161011,87120 Da
isoelectric point:6,06622
aromaticity:0,09939
hydropathy:-0,38296

Domains

Domains [InterPro]
DC_1918
ATT
1–432
DC_1918 DC_1209 IPR013320
IPR040775
RBD
46–103
IPR040775 cd19958 cd19958
G3DSA:2.10.10.80
ATT
47–117
G3DSA:2.10.10.80 DC_1416
XLV54135.1
1 1479
Architecture
ATT
STR
ATT 1-432 | STR 632-1479
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLV54135.1
1 1479
Domain Start End Length (AA) Confidence
N-terminal 1 574 574 0,4202
Central domain 575 773 200 0,3918
C-terminal 774 1479 705 0,8350
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-574
Central
575-773
C-terminal
774-1479

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HMD-6
[NCBI] 		3375969 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLV54135.1 [NCBI]
Genbank nucleotide accession
PQ505080.1 [NCBI]
CDS location
range 85881 -> 90320
strand +
CDS
ATGGCTGATATTAAAGTTGTCAGAATTGAATCTCTTCCTGCCACTACCGCAGTGACAGAGGATGATTACCTGGTTGTTCAACAACCAGACCTGACCCGTCGTGTAAAAATTGGCGATGTTGTCCATGTGGATGGGACTGTTTCTCATGTAATCTCCTTTAAGGAAGGTGGTAAGTTAAACGGCCCAATGGATTTTGCCTACTTCGAAGAGGAAGACCTCTACCTGCGTTGGAAAGGCGAATTTCCGCACACTGTTCCTGCACTGTCTTCACCTTACGCTGATGGTGGGATTACCGATGCTGCATGGATGGTATATACAGATCCGTCCTTAAGGGAGGAGCTGGAATCTACCATTGGTGCATCCATGATCATGACAGCCGAAGGGCAGTCTGTCCAGGATGTAATGGATGTTACGGTTCAGACAGCCAACGATGCTAAAGCGCTTGCACAGCGGGTAGATTTTGGTACAGTGCATACTGTAGGCGATGTCATTCACCTTGTCAACTTTGTTGGTCCTGCAGTTATTGAAGAGGGAAGAACCACTAACTACCCTTCTGAAGCAGCTGGTGAAAAATTTCTGAACGGTGTGGTATCTCGTCGTGATACTACAACTGTTGATGGTATTTTCCGTGGCGCTACCTCAGGAGCCATGTATACCATTGCAGTAACCAACGGTGTAGCAACAACAAAAAGAATAGCACTTCGTGATGAATTTAAACGCCTGGAGGCAAACAATCCAACAAGAACAGTTATCCGTGCTGGAGATGATTTAAACACAGCAGGGTACTTGCAGCTTGATGCAACAGGCCGTTGGGGTATGTGGAACCAGCAAACAGCCTCGTGGCAACCTCTTGCTATAGAGCAAGGCGGTACAGGAGCCAGAGATGCCGCTGGAGTCCGTATCAATATCGGTGCTTTCTATAAGCAACGTGCAGCCCTTGAGGCAAATTTTAATATCAATAACTTGACTGGTAATCAGGACGGCATATACTACCAGCCTATGACTGCTAATGCAACTGAGGCAAATGGTTATCCTGCAGGTTCTGGTGCTGGTCACTTGATTGTTTGGCAGAACAATGCTAACGGTGGTACAGGTTGTCGTCAGGAGTACTATCCATTCTCTAACGTGGATGTTTGGTATTTGAGAACCTATCAGGCCAACACAAACCAGTGGACTGCATGGCAGCCGATGGTCAGACCTCGGAATGATGACACCTTCAGATCTCATATCGGCCTTGGTAAAAACAACTCCCCTGCTTTCGGGCACCTTTACTTAGCTCAATACTCAGGAGATGTTAAATCTGCCTCAGGTATTCTCCATGGAGATAAATATAACACTGATGGTGTTCTTGAGCATGGTTATAGGATCTACTCAGAGGTAAGAAACGACAATAAGGCTTGGTTAACAATCCACCTGCACAAAGGTGCAAAAGGATCTGAAACTCATCGGTATTTAGGATTCCGTGAAGATGGTGTGTTAGATTGTCCTAAGTACATGCAGGTTGGGGATCTTACTGGTCAGCTGACAAACTGGGGACTGGGAGAATGGATTCGTAGTTCAGGGGCAGAAAGAGGGTTCTGGGGTTCCAAGAAAGCCGCTAAGATGGTCGTCTGGGATGGCGGTATGGATGAATCCGGTAATGGTTCTCTAGAATGGGGTGTTTATAACAACCGGAAGGCCAAGTGGGAGCCTTTACCTCAAGCTGCAGGTGGTACAGGGGCTACAACCCTGGCAGATGCTCAGAATCTGTTCAAAGTTCCTATAGCTGCGGGTGTCAAAGATTTCTTAACACTGCCAAGAACTGCAGGTATGGAAGATGGGAAATATTACCCAATCATCGTTAGAACAGATCCGTATTATGCTCCAGCAACTGGCACCGATATTACCCTAGTCACCAGATCGTCATCTGGCGGTGACCCTATGAACTGCGCCACCTTACAGTGTCACTATAGAACTGGCGGTTGGACAGATAGAGGGGACTCTTTCTACGGGGTAGTGAATTTCTATCAAAATGAAAAAGCACTTCTTGGGATGGTTGCTCCAACAAGGGGTAAACAAGAGTATGTTGCTTTCTATGCAGAGGCTCGTGCTTTCCCTGTCAGCATATACGCAAGTAGAAATGTTGTCGAAGTGTTTACCAGAGAGCAAGATTATCAAGTCGGCTCTGTAACAAACAATCAGGACGGTGTTAAGTTCGTTGCACCTCTCCAGTCAGCAGATTTAAATCTGGCTGTTCTCGGAGATAACAATACCAACACCAGACCTATTGTTGACTTCAAAGGTACCTCTGGGTTCTACACTGGCGGCGGCACACAGTGGCACTATATAGGCACTGCTGAACGCTATGCGGTGATGAGCAAAATGAACATGCCTAAAGTCGAACTATGGGCTGACGGTATTGACTATTTGTGCTACGGCAGTCCTAGAAAGGCGTTATTCTCTAATGCAGGATTCCAGTGTGCATCAGATGGGACAGATGATCTGACTAACGGTACGTTTACCTCTAAATGCGGTAATGGTGCTGGACTTCAAGGTCAGGCAGAGTTCAGATCTACCCCAGAAGCTGGTCAAGTTATTGTTCGTGATGTTGTAGGTTCCGCTCACAGATTCTACAATTTCAACAAAGACGGTACTTTCTCGGCCCCTAGTGGTTTTGTATGCCACACAGGTGCAGACTGGAACAACCAGTTCGGAAATAATAATCCGTCCAAAATACTGGCTGGCAACGTCAACGGGCCTGAAGGTTCAATGGTTGTTGGCGGGTTGTCTGTGGCGTTTTCTGGAAACTATGCTTTCCAGATGGCAGGTCGTTTAGATCAGCTGTACACCCGTTCCATAGAGCAGGGTAACCACAGAGCGTGGAACAAAGTTATTCAGCACCGTGGTCAAGGGTTGGGGACTAGCGACCTTAACGATTACAAAGCGGATCGCGAAGGTATCTACCATCAAGAGGCAAATGCCAACGCCACAGCGGAAAGACACTACCCACCAGGGCAGCAGATGGCTGGTACGCTGATCGTGCTTAGAAACTCTGCCAACGAAGGTACAGGTTGTGTCCAGATATATAAAATGTATCTTGGGGGAACGTGGGAAAGGTACTATAATAACACTGGCAGCGGAATGAACTGGAGCCCTTGGAAGAGAACGAGCTTCCCAGAAAGTACAACTGCCCCAGTCATGCCTGACCTGTGGTTGCCTTTAACCTCTAATCTAAAACCTGTACTAGGTGAAGGTGAGATGGTGTTCTCCAGACCTTCTACAGCAACATATTTCACTAAGCGCGGTGTCATGGCTGTTGCACAGGCAAACCAACCACGTTTCGAAAGAGATGGTCTGCTCATTGAAGGTCAAAGGACAAATCTGATGCTTAACAGTGAAGACCCGAGCAAATGGGGAGCCCAGTCACAGATTACGGTCGGTAACACTGTAACAAACACCAACGGCACAAAAGGTGCAAGATTTACAGTAAGCAACGTATCCGGTGTAGAAACAACGGCGTTAAACCTGGCTACAGTTCCAGCCACTCGGGGTGCAGATGTAACAGGTGCTGAGAAATTTTGTACTGGATCTATTATTGCAAGAGGTGGTAAAGCTCACCAGAGACTGCGTGTAAGATTCGACATGTATAACGGATCCACCACAGTATTCCAGGGTGATGCCTATGTTAACCTGTCAACACTTGAAGTTAAAACAACAGGTGTTGCAGCTGGGAGAATTAAAGTAAAAGCTGAGAGATGGCAAACAGCCGGACCTGCTTGGATAAGGGTTGTTGCTACGTTTGAGGCAGTGGACTCTGACATGAATATTGGGTGCCAGTTCCAGATTGCACCACCGGATGGTTCTCAACATGCCGCAGGGGATTGGATTGACGTCGCAATACCTCAGTTTGAGTTAGGATCTTGTGAGTCCTCGTTTATCCCTACAGGGTCTTCACCAGTGACTAGGGCAGCAGACCTTTGTAAATTCCCAATGACTGATAATTTAGCACCTAGACCGTTCACCATCGCCGCTACGGTGGATGCCAACTGGAGAGGTTGGGGAAAAGCTCCTAACGCAGCTCCTAGGGTTATTGATACAGAGCTCCATCAATCCGGTGCTGCATTTATCATGGGTTTTGGCTCTTCAGCAAATATTGCAGATGATGGTTATCCATATTGCGATATTGGCGGTTCAAACAGACGTGTCTATGAGATGGCTAAAACACGTAAATTGAAAATTGGGTTCAGGATAAAAGATGACGGTAAAACCTGCTCTTTTGCTAACGGATTGGTAAGTACGGAAACGCAATCTTCTTGGGAATTCCTAGCAGGAGGCGCTTTCATCCGTATCGGTGGGCAAACAGCAACTGGTGAAAGACATTTGTTTGGTCATATTAAGGATATAAGGGTTTGGAACTCTGCACTGACCGACACCCAGCTTATGATGGAGAGTGTTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c362e28f44dade0dba3fdb0ffac6cebcc45feb3a76379c9bd50f1920f31ca3f0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5897
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50