Protein

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Genbank accession
ARB11890.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MCDKDTCNDAYCCGECEPWNCLEQQVNDILATKEGQLQGYVDESKNSAAESKASAEASAQSAAESKEFRDEAETAASTAVAAEGVVLGVANTLQDTADKLGTAIAGIAVVTWYYTAVSENQTVIPVPDDKNQIAIQAIYIEGARKEPGPSRDFTYDPVTKQITLVEGIPLGQEIAIILGVYPENSDDITHILASSTGAGLIGTTNGNTVQDELNANSGSFQDGAKLLNKNNRIIDRSTNPAQLYIWDGLFPKAVPVGSTPETSGGVGVGAWISVGDAALRSELAMNDGAYLSGYGSMTVGSFLDEMTNATLITAVVTDLNANNRDAIYAHDGYVYVPRGVTVRCNFLPADDVRKFVGHGRVTTTDPWGYTHTFDVELANTGSKITARQIVAQGIKQLQGPGWQQTTIGTIGDSITDGSAGDNFTFPNPIDADGNLSSTNYDHGSNPAGGMNSWFHHFVNTVNLLAGYSEYHNRNICTGYNAARSGMGINSGWAYRNFDFGFFQNAAYGNKAPEVLLVSMGTNDVGQVFTKSDCEAYIDKLDALIAKANGYGCKVVLVSMTHFSAMAPVFYDAVMTCVQNNHPNVEFLNLADDLKLLANSSIGFYNELFREFDAIHPKTLAHQFLGGALARRMLPDRVFSIQNGDNVRSAQSGSVQAFMPLLDDITPFGIDVSANWLLPETIWPIYQTSSGTDGSDITIRHFVWVERVTQLYIVEPHVNYYESGAIPGASAKIMYPCLAGEARSRELELASNLKASFDGFLVTECDLLWPGLNVIDVKYSSVINAYAPILQFREPSWRGEFGPMRIKIPSGSANLYSNNTQTHFLQYMSFNASSPLDPLPDAGRGVRVSDWLITFAIKRASIGVAVAAWFHQFLGTSIAVFYKSATSIEVCRMTSGILKEVIADVTGNFSSDWHVQFAQASTGSIVNVIDSTGVETITPITGVSGGSIGIINLNGEAAELVVAGVSVELPRNGHIVI
Physico‐chemical
properties
protein length:976 AA
molecular weight: 105002,33300 Da
isoelectric point:4,72516
aromaticity:0,09221
hydropathy:-0,06250

Domains

Domains [InterPro]
DC_0519
STR
92–405
DC_0519 SSF52266 DC_2010
G3DSA:2.10.10.80
ATT
214–285
G3DSA:2.10.10.80 IPR049297 IPR036514
IPR040775
RBD
215–276
IPR040775 SSF52266
cd00229
ENZ
490–630
cd00229
ARB11890.1
1 976
Architecture
STR
ATT
STR
RBD
STR 92-213 | ATT 214-285 | STR 286-635 | RBD 636-955 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARB11890.1
1 976
Domain Start End Length (AA) Confidence
N-terminal 1 285 285 0,9927
Central domain 286 484 200 0,9404
C-terminal 485 976 491 0,6416
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-285
Central
286-484
C-terminal
485-976

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PatP_CB3
[NCBI] 		1958918 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB11890.1 [NCBI]
Genbank nucleotide accession
KY514265 [NCBI]
CDS location
range 34030 -> 36960
strand -
CDS
ATGTGTGATAAAGACACTTGCAACGACGCCTATTGCTGCGGTGAATGTGAACCGTGGAACTGCTTAGAACAGCAGGTCAACGACATTCTTGCTACCAAAGAGGGGCAACTCCAGGGTTACGTGGATGAATCCAAAAACTCAGCCGCTGAGTCGAAAGCCTCGGCAGAGGCGTCGGCTCAATCGGCTGCGGAATCGAAGGAGTTCCGCGACGAAGCAGAAACAGCAGCAAGCACGGCAGTAGCCGCAGAGGGTGTTGTGCTCGGTGTAGCCAATACACTACAGGACACCGCAGATAAGCTCGGTACTGCCATTGCTGGTATTGCTGTGGTTACTTGGTACTACACGGCTGTATCTGAAAATCAGACTGTAATTCCTGTGCCTGATGATAAAAACCAGATTGCTATTCAAGCAATCTATATTGAAGGTGCCCGTAAGGAACCGGGGCCAAGTCGTGATTTTACTTACGATCCAGTTACAAAACAAATTACCCTAGTTGAAGGTATCCCGCTAGGGCAGGAAATAGCCATTATTCTCGGTGTTTACCCTGAGAACTCGGACGATATTACTCATATCCTGGCTTCCTCTACGGGTGCAGGTTTGATTGGTACTACCAATGGTAATACTGTTCAAGATGAGTTGAATGCTAACTCTGGGTCTTTCCAAGATGGTGCTAAGTTACTCAACAAAAACAATCGTATTATCGACCGATCAACTAATCCTGCTCAATTGTATATTTGGGATGGCCTATTTCCTAAAGCAGTTCCTGTTGGTTCAACACCTGAAACATCTGGTGGCGTTGGAGTTGGTGCGTGGATAAGTGTTGGTGATGCAGCACTGCGGAGCGAACTGGCTATGAATGACGGCGCGTATCTGTCTGGCTATGGCTCAATGACGGTCGGTTCATTTCTAGATGAGATGACAAACGCAACGCTCATCACTGCTGTTGTTACTGATCTGAATGCAAACAATCGTGATGCAATTTACGCTCACGATGGTTATGTATACGTCCCGCGTGGCGTTACTGTCCGCTGCAATTTTTTGCCTGCTGACGATGTGCGTAAATTTGTCGGTCACGGAAGAGTAACAACAACCGATCCGTGGGGGTATACGCACACGTTTGATGTAGAACTGGCTAACACTGGCTCAAAAATCACGGCTCGGCAGATTGTGGCTCAAGGCATCAAACAGCTGCAAGGGCCTGGGTGGCAACAGACGACAATCGGAACTATTGGGGATTCGATCACAGATGGCTCAGCGGGTGATAATTTCACGTTCCCGAACCCAATTGATGCTGACGGTAATTTGTCATCAACAAACTATGATCATGGCTCAAATCCGGCTGGCGGGATGAATTCTTGGTTTCATCATTTCGTAAACACAGTAAACCTGCTAGCTGGTTATTCTGAATATCACAATCGCAATATTTGTACCGGATATAATGCCGCGCGCTCAGGCATGGGAATTAATTCCGGCTGGGCGTACCGAAATTTTGATTTCGGTTTTTTTCAAAATGCGGCATATGGAAATAAAGCTCCTGAGGTATTGCTCGTGTCGATGGGAACCAATGACGTTGGCCAGGTGTTTACTAAGTCTGATTGTGAAGCATATATCGACAAATTAGACGCATTGATCGCGAAGGCTAACGGCTATGGCTGTAAAGTTGTTCTGGTGTCTATGACGCATTTTTCAGCAATGGCTCCAGTATTTTACGACGCTGTGATGACATGTGTTCAAAACAATCACCCGAACGTTGAATTTCTGAATTTGGCAGATGATTTGAAACTGCTGGCTAACTCATCAATTGGTTTTTACAACGAGTTATTCCGGGAATTTGATGCTATTCATCCGAAAACGTTGGCCCATCAATTCCTGGGGGGAGCGTTAGCTCGCCGCATGCTCCCTGATCGGGTTTTTAGTATTCAGAACGGCGATAACGTGCGCTCTGCCCAGTCAGGTTCTGTACAAGCGTTTATGCCATTGCTCGATGACATCACGCCTTTCGGCATTGATGTCTCTGCAAACTGGCTACTACCTGAAACAATATGGCCTATTTATCAAACCAGTTCAGGCACGGATGGTTCTGATATAACAATTCGACATTTTGTATGGGTAGAGCGAGTAACGCAGTTGTATATCGTTGAGCCTCACGTGAATTACTACGAATCGGGGGCCATACCGGGCGCATCAGCAAAAATTATGTATCCGTGCCTCGCAGGCGAGGCCAGAAGCAGAGAGTTAGAGTTAGCGTCAAATTTGAAAGCGTCATTTGATGGATTTCTCGTAACAGAGTGCGATCTGTTGTGGCCTGGACTCAACGTAATTGATGTTAAATATTCCAGCGTAATAAACGCATACGCACCAATTCTGCAATTTAGAGAACCAAGCTGGCGTGGAGAGTTTGGCCCGATGCGTATAAAAATACCGTCAGGTTCCGCAAATTTGTATTCAAACAATACACAAACTCACTTTTTGCAGTACATGTCGTTTAACGCATCGAGTCCATTAGACCCGCTGCCAGATGCAGGTCGCGGTGTGAGAGTGTCTGACTGGCTGATAACATTTGCAATTAAACGTGCGTCTATTGGGGTTGCTGTAGCTGCATGGTTTCATCAATTCCTGGGCACATCTATTGCTGTGTTCTATAAATCTGCAACATCTATTGAAGTGTGCCGAATGACGAGCGGAATACTGAAAGAGGTCATTGCTGACGTGACGGGTAATTTCTCATCTGACTGGCACGTTCAGTTCGCGCAGGCATCAACCGGAAGCATAGTTAACGTAATTGATTCTACTGGAGTAGAGACAATCACGCCGATAACAGGAGTCTCAGGTGGCAGCATAGGTATCATTAATCTGAACGGAGAGGCTGCGGAGTTGGTCGTGGCTGGAGTGTCTGTGGAATTACCGCGAAACGGTCATATTGTTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aa09a9a545c9b81a2dea67cd6550aa02ece2c168416c0a0cc24f183a77b75535
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3261
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50