Protein

View in Explore
Genbank accession
QYC52677.1 [GenBank]
Protein name
tail fiber domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTVKYKTVITKAGAIKLAAATVPNGKKLNFTAMAIGDGGGTLPVPDANQTKLVNEVWRYKLNKISQDNKHQNYVVAELLIPPETGGFWMREMGLYDDTGTLIAVGNMAESYKPKLDEGSGRAQTVRMVIMVSDIESVELTIDTSTVMATQDYVDDKLAEHEQSRRHPDATLTAKGFTQLSSATDSASEMLAATPKAVKAAYDLADGKYTAQDATTAQKGIVQLSSATDSASESFAATSKAVKIAMDNAGARLAKERNGADIPDKPLFVQNIGLGNVLFKGDGRFLAGTFVSDAIDRTSIGARAATGCQFMRAHQAPDAPDQVSYWQIITLTEVVSPTSVVDVLAISGNNVLFGHGTGAGITSWRHVAMLEGAAFTGDISAPNMRGDTMVTVGDGSGGMATGGVDGAGFNGNNLNIKSWNGIGFQNSADLAIRAYISTRLGVIAAAENLQAGNAIFNKNGDVYGDIWGIGSGPGWLSAYIAGRPLRQYITMVGVYQNDKTKPFMLHDDGSGVFLATTDMLGGYVQSIRFGAVEHGNVYRSPGFADQLGYVITGVENGDSNDTPDRIQRRLLQLKVNGQWYTVGA
Physico‐chemical
properties
protein length:583 AA
molecular weight: 61856,92160 Da
isoelectric point:5,59207
aromaticity:0,07547
hydropathy:-0,15695

Domains

Domains [InterPro]
IPR051934
Unmapped
1–201
IPR051934 IPR005068 G3DSA:6.20.70.20 DC_2105
IPR022225
ATT
1–151
IPR022225 IPR005068
DC_1371
STR
1–385
DC_1371
QYC52677.1
1 583
Architecture
ATT
STR
RBD
RBD
ATT 1-151 | STR 152-385 | RBD 448-482 | RBD 522-583
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage BIS20
[NCBI] 		2861008 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC52677.1 [NCBI]
Genbank nucleotide accession
MZ520833.1 [NCBI]
CDS location
range 10839 -> 12590
strand +
CDS
ATGACAGTAAAATATAAAACGGTCATCACCAAAGCCGGTGCAATCAAGCTGGCTGCAGCGACCGTCCCGAACGGGAAAAAATTGAATTTTACGGCGATGGCAATCGGCGACGGTGGCGGTACATTGCCGGTGCCTGATGCCAACCAGACAAAGCTCGTCAATGAAGTCTGGCGCTATAAACTGAACAAAATCAGCCAGGACAATAAGCATCAAAATTATGTGGTCGCGGAGCTGCTTATCCCGCCTGAAACCGGCGGTTTCTGGATGCGCGAAATGGGGCTCTATGACGACACTGGCACGCTGATTGCCGTCGGTAACATGGCGGAAAGCTATAAACCTAAACTTGATGAGGGGTCAGGCCGCGCACAGACTGTGCGTATGGTCATCATGGTAAGCGATATCGAGTCAGTCGAGCTGACGATTGATACCTCAACGGTGATGGCAACGCAGGACTATGTCGACGATAAGCTCGCTGAGCATGAGCAGTCCCGCCGTCATCCTGACGCCACGCTCACCGCAAAGGGTTTCACACAGCTCAGCAGTGCGACCGACAGCGCGTCTGAGATGCTCGCAGCAACGCCGAAAGCGGTTAAGGCGGCGTATGACCTTGCCGACGGAAAATATACAGCTCAGGACGCTACCACAGCGCAAAAGGGTATCGTCCAGCTCAGCAGTGCAACCGACAGCGCGTCTGAATCCTTTGCAGCGACGTCGAAAGCGGTGAAAATCGCTATGGATAATGCCGGCGCGCGACTCGCAAAAGAAAGGAACGGCGCTGATATTCCTGATAAACCTCTGTTTGTTCAGAATATTGGACTGGGAAATGTGCTTTTCAAAGGTGACGGGCGATTCCTCGCAGGAACATTTGTCAGTGACGCAATTGACCGAACATCAATTGGTGCCAGGGCGGCGACAGGCTGTCAGTTTATGCGCGCACATCAGGCACCTGATGCGCCAGACCAGGTAAGTTACTGGCAAATTATCACTCTTACTGAGGTCGTGAGTCCCACGTCCGTGGTGGATGTGCTGGCCATCAGTGGCAATAACGTATTGTTTGGTCACGGCACCGGAGCGGGAATTACTTCGTGGCGTCATGTGGCGATGCTGGAGGGAGCCGCCTTTACGGGGGATATTTCTGCACCCAATATGCGTGGCGATACCATGGTCACGGTTGGAGATGGTTCCGGAGGGATGGCAACAGGTGGCGTTGATGGTGCAGGTTTTAACGGTAACAACCTGAACATTAAGTCATGGAATGGTATCGGATTTCAGAACTCAGCAGACCTGGCTATTCGGGCATATATCAGCACCCGACTCGGTGTTATTGCTGCTGCTGAAAATTTGCAGGCCGGAAATGCGATATTCAACAAAAACGGCGATGTTTACGGCGATATATGGGGCATCGGTAGCGGGCCTGGCTGGCTGAGTGCGTATATAGCGGGCAGACCGTTACGACAATACATCACTATGGTCGGTGTGTACCAGAATGACAAAACAAAGCCATTCATGCTGCATGATGATGGTTCTGGTGTATTCCTTGCCACAACTGACATGCTAGGTGGGTATGTTCAGTCCATCCGTTTCGGTGCCGTTGAGCATGGAAACGTATATCGCTCGCCCGGATTTGCAGACCAGTTAGGTTACGTCATTACAGGTGTTGAGAATGGAGACTCGAACGATACACCAGACAGAATTCAGCGACGCTTGTTACAGCTAAAAGTGAATGGTCAGTGGTATACGGTGGGGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e56e5b99e77afd50afc5a99dd873188b2b687235c44602c786a6878a8881fec0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7439
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Analysis and Therapeutic Evaluation of a new Salmonella enterica Bacteriophage Sattar,S., Altermann,E., Bailie,M. and Khanum,S. 2022-01-25 — GenBank