Protein

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Genbank accession
ADO98653.1 [GenBank]
Protein name
YadA domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MATRKISDLTLLGVGQVSSSDTLLLLDNSDPTDQNKRSAVGSIFTAVPSGTYTAPGVRFEGKTSTGLFSSSQGQVGLSLGNSRLNLQKVGTTLNVEARDDADQNLDFKLSAQGTGKIRLGSVLAINDLNFIVPNSVDETKVAKFSSINLTAGLTNVYSFPSNEGLTNTTDELVTLKATQTLENKTIVSPTFTGTLSVVDILSSGSTTLGDDAADSLTVNAAATFAASTTFSNTLIISQGATVTGDLNLNDHLEMIDDKIIKMGTDDDLQIAYTNSTDASTITDTSTNGLTISSADIGLNSGATKFLKANATNTIVYHNDTARITTSATGISIGGAIDAVTSITGSGDITIATDKFTLASATGDAVFGGNITGGGNVTATTGTDFQLGSTASAKLGIGRAATTYNLEVEGSIYSTGSTIIAGNGSAGKFILQKGAAAIGTHFTNNIGTDEMILDANANLGIGKTPGQRLDVSGNANVDGNLVITTTDPSTNVGGQIAARQIVLTNPLTGQSATLDASSTGGVSRARVFFANM
Physico‐chemical
properties
protein length:531 AA
molecular weight: 54157,28490 Da
isoelectric point:4,52918
aromaticity:0,04520
hydropathy:0,00132

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADO98653.1
1 531
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,7807
Central domain 137 335 200 0,1103
C-terminal 336 531 195 0,9055
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-335
C-terminal
336-531

Taxonomy

  Name Taxonomy ID Lineage
Phage Eurybiavirus PHM1
[NCBI] 		3428631 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO98653.1 [NCBI]
Genbank nucleotide accession
GU071101 [NCBI]
CDS location
range 19474 -> 21069
strand +
CDS
GTGGCAACTCGTAAGATATCCGATTTGACATTATTAGGTGTAGGACAAGTATCATCGTCTGATACTCTTTTATTACTTGATAACTCAGATCCAACCGACCAAAATAAAAGATCCGCAGTAGGAAGTATTTTTACTGCAGTTCCGTCTGGAACTTATACAGCACCTGGCGTTCGTTTTGAAGGCAAAACTTCTACTGGTCTGTTTTCTTCTTCACAAGGACAGGTTGGTCTTTCTTTGGGTAACTCTAGACTCAACTTACAAAAAGTTGGAACCACTCTTAATGTAGAAGCAAGAGACGATGCTGATCAAAACTTAGACTTTAAACTATCTGCACAGGGAACTGGTAAGATACGTTTGGGGTCTGTTTTAGCAATTAATGATCTTAACTTTATCGTTCCTAACTCAGTTGACGAAACTAAAGTCGCAAAGTTTAGTTCTATAAACTTGACTGCGGGTTTAACTAACGTGTATTCATTCCCATCGAACGAGGGATTGACTAATACAACTGATGAATTAGTAACACTTAAAGCAACACAGACATTAGAAAATAAAACTATTGTCTCACCAACATTCACTGGAACTTTATCTGTAGTAGATATTCTTTCTAGTGGTAGCACAACACTAGGTGATGACGCTGCTGATAGTTTGACTGTCAATGCTGCTGCAACATTTGCTGCATCAACGACATTTTCTAACACATTAATTATTAGTCAAGGTGCAACTGTTACTGGTGATCTTAATTTAAACGATCATCTTGAAATGATTGATGACAAGATCATCAAGATGGGAACTGATGATGATCTACAAATAGCATATACTAATAGCACAGATGCATCAACAATTACAGACACTTCTACAAATGGTCTAACCATTAGCAGTGCTGATATTGGATTAAACTCTGGTGCTACTAAGTTTTTAAAAGCAAATGCTACAAATACAATTGTATATCATAATGATACTGCACGCATCACAACAAGTGCAACAGGAATTTCAATTGGAGGTGCTATAGATGCTGTCACATCTATCACAGGCAGTGGCGACATCACTATTGCTACTGATAAGTTTACTCTGGCTAGTGCTACTGGCGACGCTGTATTCGGAGGCAACATTACAGGTGGCGGTAACGTTACCGCTACTACAGGAACTGACTTTCAGTTAGGTTCCACTGCTTCTGCCAAACTAGGTATTGGTAGAGCAGCAACTACATACAATCTAGAAGTTGAGGGGTCTATATATTCTACAGGCTCTACTATCATTGCAGGAAATGGATCTGCGGGTAAGTTCATCCTACAAAAGGGTGCTGCTGCTATCGGAACTCATTTTACCAATAATATTGGAACTGATGAGATGATACTAGATGCGAATGCTAATCTTGGTATAGGCAAAACACCTGGCCAAAGACTTGACGTATCTGGTAATGCAAATGTTGATGGTAATTTAGTGATAACCACAACTGATCCATCAACTAATGTTGGTGGTCAAATTGCTGCTAGACAGATAGTTCTCACTAATCCACTAACAGGTCAATCTGCAACACTAGACGCATCCTCTACTGGAGGAGTCTCAAGAGCAAGAGTGTTCTTTGCAAACATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd49a2630301297c248c1e8041cbfa7a1c41d92f731e364dd8733d627f562c4f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6576
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage M4-247 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank