Protein

View in Explore
Genbank accession
YP_009791943.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAYTEIAMAVGNSPEILARNVKIMISSGFQPYGDVQMLSGTLFGMKMAKGTANNVEDFMVTSDTTIQGLVNRVNRYLAQGWRRFGNAHFEDGAYLSALAKGDFVSDEEGGSGEAGPQGPVGPQGPAGPAGAIGPQGPQGPTGATGPAGSAGAKGDTGPAGPVGPQGPQGETGESGPQGPIGATGAAGPAGPKGDKGDAGPVGPAGLTFRGMYDAATAYVKDDVVTFNNSSWFATAAVTGENPDVSDSWELLAAQGAPGPQGSAGPAGPTGPTGPEGIQGPQGERGLQGEQGPAGPQGLQGVAGAVGPQGPAGPQGERGLQGPTGPQGLQGVAGPASYNVASGVRSGLINQTDTDFIDIPGETTIRFALTGEKNATVPAKGLWVGVSNTGTANIASIRHTAYQIDSLTTVAADKLKNYTAIVTSMPPGAALWNSVFKPGVFGVTSEHYITTSPGATADSKCFKLTIVGIRNSSDTLAGVYAYKVENLSKPLA
Physico‐chemical
properties
protein length:491 AA
molecular weight: 48991,73330 Da
isoelectric point:4,85771
aromaticity:0,06314
hydropathy:-0,25377

Domains

Domains [InterPro]
DC_0876
STR
1–289
DC_0876 G3DSA:1.20.5.320
IPR050149
Unmapped
109–334
IPR050149
IPR008160
STR
145–203
IPR008160 IPR036573 IPR008160
G3DSA:1.20.5.320
STR
181–228
G3DSA:1.20.5.320
DC_0620
STR
210–487
DC_0620
IPR003610
CBM
212–251
IPR003610
YP_009791943.1
1 491
Architecture
STR
STR 1-487 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sd1
[NCBI] 		2024313 Uroviricota > Caudoviricetes > Drexlerviridae > Wilsonroadvirus > Wilsonroadvirus Sd1
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009791943.1 [NCBI]
Genbank nucleotide accession
NC_047847.1 [NCBI]
CDS location
range 30737 -> 32212
strand -
CDS
ATGGCTTACACAGAAATTGCTATGGCAGTAGGGAATTCACCTGAAATCTTAGCCAGAAACGTAAAAATCATGATTTCATCAGGATTCCAGCCATATGGCGACGTGCAGATGCTGAGCGGCACCCTCTTTGGCATGAAGATGGCGAAAGGAACAGCAAACAACGTTGAAGACTTCATGGTGACATCCGATACCACAATTCAGGGATTAGTTAACAGGGTTAACAGATATCTAGCCCAGGGCTGGCGCAGGTTTGGCAATGCCCACTTCGAAGATGGTGCTTATCTTTCAGCGCTGGCGAAAGGTGATTTTGTAAGTGATGAAGAAGGAGGCTCAGGTGAAGCAGGCCCGCAAGGTCCGGTTGGTCCACAGGGTCCAGCGGGCCCGGCAGGAGCTATTGGTCCACAGGGTCCTCAAGGCCCAACAGGTGCTACCGGCCCGGCAGGCTCGGCAGGTGCCAAAGGCGACACTGGTCCAGCTGGCCCCGTAGGCCCGCAAGGTCCTCAAGGTGAAACTGGCGAGTCTGGTCCGCAAGGCCCTATCGGTGCAACCGGCGCAGCAGGTCCGGCCGGCCCTAAAGGTGATAAAGGTGATGCGGGTCCAGTTGGTCCGGCAGGCTTAACATTCCGCGGGATGTACGACGCTGCGACAGCTTACGTTAAAGATGATGTCGTTACATTTAACAACTCTAGCTGGTTTGCTACCGCCGCCGTGACCGGAGAAAATCCAGATGTTAGCGATTCCTGGGAGTTACTGGCCGCACAGGGTGCCCCAGGCCCACAGGGTTCCGCTGGTCCAGCAGGCCCAACTGGCCCGACAGGTCCGGAAGGTATTCAAGGCCCACAAGGCGAGAGGGGCCTGCAAGGTGAGCAAGGCCCAGCCGGCCCGCAAGGCTTACAAGGTGTAGCTGGTGCAGTTGGACCACAAGGCCCGGCAGGCCCGCAGGGTGAGCGTGGATTGCAGGGCCCTACGGGACCTCAGGGCTTACAGGGGGTGGCTGGTCCAGCCTCTTATAACGTAGCTTCAGGCGTAAGGTCGGGGTTGATCAATCAGACGGATACTGACTTTATAGATATACCCGGAGAGACAACAATAAGGTTCGCCCTTACCGGAGAGAAGAACGCCACAGTTCCAGCCAAGGGTTTATGGGTTGGTGTTAGTAATACTGGTACAGCAAATATCGCTTCAATAAGGCACACTGCATACCAGATTGACTCACTCACTACAGTTGCAGCTGATAAGTTGAAAAACTACACAGCGATAGTAACAAGCATGCCTCCTGGGGCCGCTCTTTGGAATAGCGTATTCAAGCCAGGCGTTTTTGGAGTCACATCTGAGCATTACATAACCACATCACCAGGAGCTACGGCTGACTCTAAATGCTTCAAGCTTACAATAGTTGGAATAAGGAACTCATCTGATACTTTGGCAGGCGTTTACGCTTATAAGGTGGAAAACCTAAGCAAACCTCTCGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
885a74e0fc5c9f7a670cfd001518fcd696d3ae2c264f8856f5b850ac878b0aea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7260
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank