Protein

View in Explore
Genbank accession
AHC30560.1 [GenBank]
Protein name
polysaccharidase protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MRACLVEDNDFSGLYFCLSSVSSLNTLRNNRMNNATYSSNSFTMGIGSTYSIGDQQWYDNHAFGPGNRAFVISGSGEASGAPLWSRYDLEINDNIGEGHTTFFFQNRLMSGYFQNNVGQSNVSNTVTGVTTVATGGDYTTRTVTPNFLNAAPGPVCTAKGQVTGTVQDGQTVTVSAPTFEGAVSIQYQWRLNGKYVAGATTQSFTIPAGFSATVSDRVPTTAATGFPGGSAGELSCITRGVDAAGNVMIAPAKFANDEYYMPIAA
Physico‐chemical
properties
protein length:265 AA
molecular weight: 27983,52200 Da
isoelectric point:4,91211
aromaticity:0,10943
hydropathy:-0,16302

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AHC30560.1
1 265
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0031
Central domain 11 206 197 0,8237
C-terminal 207 265 58 0,2833
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-206
C-terminal
207-265

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage vB_RleS_L338C
[NCBI] 		1414737 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHC30560.1 [NCBI]
Genbank nucleotide accession
KF614509 [NCBI]
CDS location
range 88237 -> 89034
strand +
CDS
TTGCGTGCGTGCCTGGTAGAAGACAACGACTTCAGCGGCCTCTATTTCTGCCTGTCGTCGGTCTCCTCGCTGAACACGCTGCGCAACAACCGCATGAACAACGCCACCTATAGCTCCAACTCGTTCACCATGGGTATCGGCTCGACATACAGCATTGGTGACCAGCAGTGGTACGATAACCACGCATTCGGGCCGGGCAACCGCGCCTTTGTCATCTCTGGATCGGGCGAGGCCTCCGGCGCTCCGTTGTGGTCGCGCTACGACCTGGAAATCAACGACAACATCGGCGAAGGCCACACGACGTTCTTCTTCCAGAACCGCCTGATGTCCGGATACTTCCAGAACAACGTCGGGCAGTCCAACGTCAGCAATACTGTGACCGGCGTGACCACCGTGGCGACCGGCGGCGACTATACCACCCGCACCGTCACCCCGAACTTCCTCAACGCCGCGCCTGGACCCGTCTGCACCGCCAAGGGACAGGTCACAGGCACGGTCCAGGATGGTCAGACGGTCACCGTGTCGGCTCCGACCTTCGAGGGCGCTGTCAGCATCCAGTACCAGTGGCGCTTGAACGGCAAGTACGTCGCGGGCGCAACCACGCAGAGCTTCACCATCCCGGCGGGCTTCAGCGCCACGGTCTCTGATAGGGTGCCCACCACGGCGGCGACCGGCTTCCCTGGCGGCTCGGCTGGCGAACTGTCCTGCATCACCCGTGGCGTGGACGCGGCTGGCAACGTCATGATCGCTCCGGCCAAGTTCGCAAATGACGAATACTACATGCCCATCGCCGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
900e7b20ff470b59c4d360c57b0a6415e18f43705326f4f056e0211c2630787b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6038
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Rhizobium leguminosarum phages from western Canadian soils and complete genome sequence of rhizobiophage vB_RleS-L338C Restrepo-Cordoba,M., Halmillawewa,A.P., Hynes,M.F. and Yost,C.K. 2015-09-16 — GenBank