Protein

View in Explore

Genbank accession

YP_009605949.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Protein sequence

MAENVKVEYEDLGDLDLDFDFDFGDDASTKKKGKGGAIREFAAGLWTGAKEEVFTKGTPQRIIRSLLPASFSPAFDAKDRAARFKDDLYDKVKSNTRNSVNDIKDLTLDALSMYGGKLPEKVLKQIEVWAENKDIDYSVSSTKPADPGLDDGSTGNENDDYVTMMQQATLQSSQLAVALHKESMAQTAAVATRQASVSADSLAFMQGIHRLTARTVGFNEQFTANYQRKSLELQYRSYKLQLSIGKMQERFYKRSLDAMSSLVKNTGLTDFEKMSHSASARELIRKRALGGLGGTVSQFGNRLFDNVFNMVDQRSQDMNHRASGGIAAARAAMMGAQQARMMGRSLGARDYGQMAGQGLVGMLPMMLSSLARPALSRNPGLNRMGHDLSYYSNAAPGLINGWLRNRQSFDENFDPNAEGNKWHTRLQKRVVNPFLNNALFQLPASMGNRTRLHNPGVKDLTEPAVWDQMSRRSLVEVIPGLLTKQLAQQTAIANKLEADVGSVSEVHFNHIQGGFTSKKRANVDLRSSIFNRNEFSSAAGSFNTMVETLDPDQELSPNARVALAMRFARDAEAGDGFNVNTYLKSSGWGNANKEAVQEINEFLHKRFDTREATGRAKAFGDYQIGDAPELAQMRNNLSNVMQAQSQYMPNVEQSLNTMANSGSRAQLKDMGVIKRVNGQDVFNHEMYWEMMQKFIANPNYRPDREGEDSNERGSNVNPGAELGEMGRETLDNLRRGVTDSLGNLRGRLTREQEEEIRAQLSQARANSPEYYQVVLQQLRARYGEAAVNRIARRLDNSLGQSLRDRVNGFGGAGAAGAAGGSGGLGDSLRNMGESASNLFGKINSVRPDTSAVKQALLNAASSGKEALRNATTELQRRFGRQAVEEAASEIAQEAEVVRSSGVFNDGTADRASRTRLPSEGITAPDAGSASETAAIVQAQLDNNALLRETIGVLASVRDSVTATKDATIAQVTGDPDIMKDSVNERQGWLRKLSGRMSNQGKSSGLIRKVFKSLPNINSPVLTVAKWTTVMPAVLGFKATRGLWRMLRDKKREDASDPDHDGVRNNSVADLIRRRAQQKKEREEAQHAHDSDDHAKDKEKPTTLFGLVAGLFSSVTGLVSGIKEFGILGGLAKFLGLGWIGDIVKGIGSVISGGKGVMDELSDALGDDDEGGEEDGGRRRRGGRRNRGGAGGGGPRPRGGLIRRLAGKAARGVRGLGRGIVGRTGGMLGRGVAGNLKLLVKGGGIVTAGVSALEAWDSYKAGDNAGVAEAAGSGVGGILGGAAMGAAIGSVVPVVGTAIGAIAGGAIGALGGGAIGRSLYTWFNDPGLLQQMRLRQYGVPDNDSSHVSAILKLEAALEPYVKTTDDGYASLDPKAPIAQLGSLFVDDPNDREQVEQFAGWFLHRFKPVYLTHKAVAKQVLPSQAFMDLDKSTDEAAKYEIAKRAQQFDESSDHPYMFTGRIFPDLNATDRKQTEALVKDVLDRLRNKAQKMTTGKSASVFATGMDKVASSRELSSDMVKAINPNGDIPELKTVGHKESSWFTGDRTVVSAGDLLGGLLPKAGQPMDDLTALRMKVYGLPTLDVDRVSTLLQLELVMANKIKFADNGATFDGKASDIYRVVAASFGLSPSNQWSYKSWEPWFTRRFLPAYLAFASTVYTQTGDSRPTLAVPKMPPELKFAAATAITNAKYSDGVNAISVWTIKTSPWSTGELNDDASVVQNHLNNLKAQVKQAQYSAEAVKGGVQQRADGTTEKDWRKDSSGNMVNNQVKTSTGQVYTSQRQVTTYNPETGRIETAYGGGAAGGAAGAGGGIDNTGKVGPIKLGPGAEEGARILIREAMKSGITDKQELAMLLAQTHLESGGFSKLEENLRYKAETLMRLWPNRFPTLAAAQQLATAGPVAIANSIYGGRMGNDKPGDGWKYRGRGFMQLTGKANYAAASKGLGVDLVSDPDKLSTDPTMAAKSALWYWKSRNGIEEAAKKGDLNTVTKLVNGGTHGLAERGQLFKQYTDLMGTGKFDDILSGKDQSAGPQGDAAEDNQAQTLASGQAQSGPSTPALSGAKTAAELTAPGASAANAVAPPPGQGDAPALKSTSGPSVAAAVSAGSSTPNAKDSTASAIDKQAAADASTPTPTTPTLNTPPRMQPTQGQVPNAPQVTTVTPAPAPVPVLPKESAAAISGSKDHLANIDNNMNSLVEIMKQFIAVQTQMLNKPAPAAPQAPASGAGTPPVSFARKYGNG

Physico‐chemical properties

protein length:	2235 AA
molecular weight:	238946,49620 Da
isoelectric point:	9,13938
aromaticity:	0,06130
hydropathy:	-0,45651

Domains

Domains [InterPro]

DC_0124
STR
1–1939

DC_0124 DC_0824

Coil
Unmapped
1067–1087

Coil IPR052354

G3DSA:1.10.530.10
RBD
1831–2011

G3DSA:1.10.530.10

IPR023346
STR
1838–2015

IPR023346

cd00325
ENZ
1842–2018

cd00325

IPR000726
ENZ
1916–1970

IPR000726

YP_009605949.1

1 2235

Architecture

STR

RBD

STR 1-2018 | RBD 2019-2235

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0124	STR	DC_0124	1	1939	Novel HMM	DC_0124	Central	Low	Positional only	152 proteins / 152 hits
Coil	Unmapped	-	1067	1087	Coils	Coil	-	-	-	-
IPR052354	Unmapped	-	1814	1998	InterPro	Bacterial Cell Wall Dynamics Protein	-	-	-	-
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1831	2011	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
IPR023346	STR	IPR023346	1838	2015	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
cd00325	ENZ	DC_0654	1842	2018	InterPro cluster	chitinase_GH19	C-terminal	High	Text match	13 proteins / 13 hits
IPR000726	ENZ	DC_0328	1916	1970	InterPro cluster	Glycoside hydrolase, family 19, catalytic	C-terminal	High	Text match	27 proteins / 27 hits
DC_0824	RBD	DC_0824	2019	2235	Novel HMM	DC_0824	C-terminal	Low	Positional only	10 proteins / 10 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Erwinia phage vB_EamM_Simmy50 [NCBI]	1815988	Uroviricota > Caudoviricetes > Chimalliviridae > Agricanvirus simmy50 >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_009605949.1 [NCBI]

Genbank nucleotide accession

NC_041974.1 [NCBI]

CDS location

range 121125 -> 127832
strand -

CDS

ATGGCCGAGAATGTCAAAGTCGAGTACGAAGATCTGGGTGACCTTGACCTGGACTTTGACTTCGATTTCGGTGACGATGCAAGTACGAAGAAGAAGGGTAAAGGCGGGGCGATTCGTGAGTTCGCCGCAGGCCTTTGGACTGGTGCCAAAGAGGAAGTGTTCACTAAAGGCACTCCTCAGCGTATCATTCGCTCTTTGTTACCCGCATCGTTTTCGCCTGCGTTTGATGCAAAAGATCGCGCAGCAAGATTCAAAGATGACCTATACGATAAAGTTAAAAGTAATACCCGTAACTCTGTCAATGACATCAAAGACCTAACCCTCGATGCATTATCGATGTACGGTGGGAAATTGCCGGAGAAGGTCTTAAAGCAAATTGAAGTCTGGGCTGAGAATAAAGACATAGATTATTCGGTCTCCAGCACCAAGCCCGCTGATCCCGGTCTGGACGACGGCTCAACCGGTAACGAGAACGACGACTACGTTACCATGATGCAGCAGGCTACACTGCAGTCGAGTCAGCTGGCCGTGGCCCTACATAAAGAGAGCATGGCACAGACCGCCGCAGTCGCCACCAGACAGGCGAGCGTCTCTGCAGACAGTCTGGCCTTCATGCAAGGCATCCATCGCCTCACAGCCCGTACCGTTGGCTTTAATGAGCAGTTCACTGCCAACTACCAGCGCAAGTCATTAGAGCTCCAGTACCGTTCGTATAAACTGCAGTTGTCAATTGGCAAGATGCAAGAACGTTTCTACAAACGCAGTCTGGACGCCATGTCAAGTCTGGTGAAAAATACCGGCTTAACTGACTTCGAAAAGATGAGTCATTCTGCCTCGGCCCGTGAGTTGATTCGTAAACGTGCACTGGGTGGGTTAGGCGGTACGGTCTCGCAATTTGGTAACCGTCTGTTTGACAATGTCTTTAACATGGTGGATCAACGTAGCCAGGATATGAACCACCGCGCCTCGGGTGGGATTGCTGCCGCCCGTGCTGCCATGATGGGTGCGCAACAGGCCCGCATGATGGGGCGCTCGCTTGGGGCGCGTGACTACGGACAGATGGCGGGTCAAGGACTGGTCGGTATGTTGCCGATGATGCTTTCCTCTTTAGCCCGTCCTGCACTGTCGCGTAACCCGGGTCTGAACCGTATGGGTCATGACTTAAGCTATTACTCAAATGCGGCACCGGGTCTGATCAATGGTTGGTTACGTAACCGTCAGTCTTTTGATGAGAACTTCGATCCGAATGCCGAGGGGAATAAATGGCACACGCGGTTACAAAAGCGTGTTGTTAACCCCTTCCTGAATAACGCCCTCTTTCAATTGCCGGCATCCATGGGTAACCGTACTCGGTTGCACAACCCTGGCGTGAAAGACCTGACTGAACCAGCTGTTTGGGATCAGATGTCACGGCGTTCATTGGTGGAAGTGATTCCAGGCTTACTGACTAAACAACTGGCCCAGCAAACGGCGATTGCCAATAAACTGGAAGCGGATGTCGGGTCGGTGTCGGAAGTGCACTTCAACCACATCCAGGGTGGCTTCACTTCCAAGAAACGGGCGAACGTCGATCTGCGTTCGTCGATCTTTAATCGCAATGAGTTCTCCTCGGCCGCAGGTTCCTTCAATACCATGGTGGAAACCCTCGACCCCGACCAGGAGCTCTCACCCAATGCCCGTGTGGCATTAGCGATGCGTTTTGCCCGGGATGCTGAAGCGGGTGATGGCTTCAACGTCAACACCTACTTGAAGTCCAGTGGCTGGGGTAATGCCAATAAAGAAGCAGTGCAGGAGATCAATGAGTTCTTGCACAAACGTTTCGACACTCGGGAAGCAACCGGTCGGGCCAAAGCCTTTGGTGATTATCAGATTGGCGATGCACCCGAACTGGCACAGATGCGTAATAACCTGTCTAACGTTATGCAGGCCCAGTCGCAGTATATGCCGAATGTCGAGCAGTCACTGAATACCATGGCTAACAGTGGTAGTCGGGCACAGCTCAAAGACATGGGTGTCATCAAACGGGTTAATGGCCAGGATGTCTTTAACCACGAGATGTACTGGGAGATGATGCAGAAGTTCATTGCTAACCCGAACTATCGTCCTGATCGTGAAGGGGAAGATTCCAATGAACGCGGCAGTAATGTTAACCCTGGAGCAGAACTCGGTGAGATGGGGCGTGAGACGCTGGATAACCTGCGTCGTGGCGTGACAGACAGTCTGGGCAACCTGCGGGGTCGACTCACCCGTGAACAAGAGGAGGAGATCCGTGCACAACTTTCCCAAGCCCGAGCTAACAGCCCGGAATATTATCAAGTGGTGCTTCAGCAGCTTCGTGCGCGATATGGGGAGGCTGCTGTTAATCGTATTGCTCGTCGTTTGGATAACAGCCTTGGCCAAAGTCTGCGCGATCGAGTAAACGGCTTTGGTGGTGCGGGTGCGGCAGGCGCTGCAGGCGGCAGTGGCGGTCTGGGTGATTCATTGCGTAACATGGGTGAAAGTGCCAGTAACTTGTTTGGCAAGATCAACTCAGTTCGTCCGGACACCAGTGCGGTGAAACAAGCGCTGTTGAATGCTGCATCCAGTGGTAAGGAAGCGTTGCGTAATGCCACCACCGAACTGCAACGTCGCTTTGGTCGTCAGGCTGTAGAAGAGGCGGCTTCAGAGATTGCTCAGGAAGCAGAAGTCGTACGCTCCTCTGGGGTGTTCAATGACGGTACGGCGGATCGGGCTTCACGCACTCGCTTACCTTCTGAAGGGATTACTGCACCGGATGCGGGCAGTGCCTCAGAGACGGCAGCGATTGTACAGGCCCAACTTGATAACAATGCCTTGCTGCGTGAAACCATCGGTGTCCTGGCCTCTGTGCGTGATAGCGTAACAGCGACCAAAGATGCCACCATTGCGCAAGTGACCGGTGATCCTGACATTATGAAGGATTCGGTGAATGAGCGTCAGGGGTGGTTGCGTAAACTGTCGGGTCGGATGAGTAACCAAGGCAAGTCATCTGGGTTGATTCGTAAAGTCTTCAAAAGCTTACCGAACATCAACAGTCCCGTTTTGACCGTTGCGAAGTGGACTACCGTCATGCCGGCGGTTCTAGGCTTCAAAGCGACTCGTGGCTTATGGCGGATGCTGCGTGATAAGAAACGAGAAGATGCCAGTGACCCGGATCACGATGGGGTGCGCAATAACTCGGTTGCTGATCTGATTCGTCGCCGTGCTCAACAGAAGAAAGAACGTGAAGAAGCCCAACACGCACATGACTCTGATGACCACGCCAAAGACAAGGAGAAACCCACCACATTGTTTGGATTGGTGGCAGGGTTGTTCTCCTCCGTTACTGGTCTGGTCTCCGGTATCAAGGAGTTCGGTATCCTCGGTGGGCTGGCCAAGTTCTTAGGGCTGGGTTGGATCGGTGATATTGTCAAAGGGATCGGTAGTGTGATCTCCGGCGGCAAAGGCGTCATGGATGAACTCAGCGATGCGCTCGGTGATGATGATGAGGGCGGTGAAGAGGATGGCGGTCGCAGGCGTCGGGGTGGTCGTCGTAACCGCGGCGGTGCTGGCGGCGGCGGTCCACGTCCACGTGGCGGATTGATCCGTCGCTTAGCCGGCAAAGCCGCCCGGGGTGTTCGTGGTCTCGGCCGAGGTATCGTTGGTCGTACAGGCGGTATGTTGGGTCGTGGTGTTGCCGGTAACCTGAAACTACTGGTTAAAGGTGGCGGGATTGTCACAGCCGGGGTTTCAGCACTGGAAGCGTGGGATTCGTACAAGGCAGGTGATAACGCAGGTGTGGCAGAAGCAGCTGGCTCCGGTGTTGGTGGTATTCTGGGTGGTGCGGCGATGGGTGCCGCTATCGGTTCAGTCGTGCCAGTTGTCGGTACAGCCATCGGTGCTATTGCTGGCGGTGCCATTGGTGCATTAGGGGGCGGTGCTATCGGTCGTTCTTTATACACCTGGTTTAATGACCCGGGCTTACTGCAGCAGATGCGCCTGCGTCAGTATGGTGTTCCGGATAATGACTCCAGTCATGTCTCAGCCATCCTGAAGTTGGAAGCAGCGTTAGAGCCGTATGTCAAAACCACCGATGATGGCTATGCCTCACTCGACCCGAAAGCCCCAATCGCCCAACTCGGTTCATTGTTTGTTGATGACCCGAATGACCGTGAGCAAGTGGAGCAATTCGCGGGTTGGTTCCTGCATCGCTTCAAACCGGTTTACCTGACCCACAAAGCCGTGGCGAAACAAGTCCTCCCAAGCCAGGCCTTCATGGATCTGGATAAGTCGACGGATGAAGCGGCAAAGTACGAGATCGCCAAACGCGCACAACAGTTCGATGAGTCATCTGATCACCCGTACATGTTTACTGGTCGTATCTTCCCGGATCTGAATGCAACTGATCGCAAACAGACCGAAGCGCTGGTAAAAGATGTGCTGGATCGTCTGCGCAACAAAGCTCAGAAGATGACCACGGGGAAATCAGCGTCGGTCTTTGCAACCGGGATGGATAAGGTTGCCTCCAGCCGTGAACTCAGCAGTGACATGGTCAAAGCCATTAATCCAAATGGTGATATCCCTGAGCTGAAAACGGTTGGGCATAAAGAGTCGTCGTGGTTTACCGGTGATCGTACTGTGGTCAGTGCCGGGGATCTCTTAGGTGGCTTACTACCTAAAGCCGGTCAGCCGATGGATGATCTCACTGCGCTGCGTATGAAAGTGTATGGCCTGCCAACGTTGGATGTTGATCGTGTGTCGACACTCCTGCAGTTGGAACTGGTGATGGCGAACAAGATCAAGTTTGCAGATAATGGTGCGACGTTTGACGGTAAAGCCTCAGACATCTACCGGGTTGTTGCTGCAAGCTTTGGCTTGAGTCCATCCAACCAGTGGTCTTACAAATCATGGGAGCCGTGGTTTACTCGTCGCTTCTTACCAGCGTACTTAGCGTTTGCCAGCACGGTATATACCCAGACCGGAGACAGTCGACCGACGCTTGCTGTACCGAAGATGCCACCTGAGTTGAAGTTCGCTGCAGCGACAGCGATAACCAATGCCAAATACAGCGATGGCGTGAATGCGATCTCTGTTTGGACCATTAAGACCTCGCCGTGGTCAACCGGTGAACTTAATGATGATGCCTCTGTTGTTCAAAACCACCTGAATAACCTGAAGGCACAAGTCAAACAAGCGCAGTATTCTGCTGAAGCGGTAAAAGGCGGTGTGCAACAACGGGCCGATGGCACTACTGAGAAAGATTGGCGTAAGGACTCGTCCGGTAACATGGTGAACAACCAGGTGAAGACGAGTACCGGTCAAGTCTATACCTCTCAGCGTCAGGTAACAACATACAACCCGGAAACGGGACGTATCGAGACAGCCTATGGTGGCGGTGCGGCAGGTGGTGCGGCAGGTGCAGGCGGGGGGATTGACAACACCGGGAAGGTTGGGCCGATTAAGTTAGGTCCAGGTGCTGAAGAGGGTGCGCGTATCTTGATTCGTGAAGCCATGAAGTCCGGCATTACGGATAAACAAGAACTCGCCATGCTCTTGGCCCAGACTCACCTGGAGTCCGGAGGCTTTAGCAAACTCGAAGAGAACCTGCGTTATAAAGCAGAGACTCTGATGAGGCTCTGGCCTAACCGCTTCCCCACCCTGGCAGCTGCGCAGCAGTTAGCGACAGCGGGTCCAGTGGCGATTGCCAACTCGATCTACGGCGGTCGTATGGGGAACGACAAACCGGGAGATGGTTGGAAGTACCGTGGACGTGGCTTCATGCAGCTGACCGGTAAAGCCAACTACGCAGCCGCCAGTAAAGGCCTTGGCGTTGACCTGGTGTCCGATCCCGATAAACTCTCGACTGACCCAACCATGGCTGCGAAGTCAGCACTGTGGTATTGGAAGTCGCGTAATGGGATTGAGGAAGCTGCGAAGAAAGGGGATCTGAATACTGTTACCAAATTGGTTAACGGCGGGACACACGGTTTAGCTGAACGTGGTCAGTTGTTCAAACAGTATACGGATCTAATGGGGACTGGGAAGTTTGATGACATTCTCTCGGGTAAAGATCAGTCTGCTGGCCCACAAGGTGATGCAGCTGAGGATAACCAGGCACAAACCTTGGCATCCGGTCAAGCACAGAGCGGGCCTTCTACTCCGGCATTGTCGGGCGCGAAGACGGCAGCTGAGCTGACTGCACCGGGTGCATCTGCGGCTAATGCCGTAGCACCACCTCCGGGCCAGGGTGATGCGCCAGCATTGAAGTCAACAAGTGGACCAAGTGTAGCCGCAGCCGTTTCTGCAGGTTCATCGACACCGAATGCCAAAGACTCCACGGCATCGGCTATCGATAAGCAAGCAGCCGCTGATGCGTCTACGCCAACACCAACCACCCCAACCCTTAACACACCTCCTCGCATGCAACCGACCCAAGGGCAGGTTCCTAATGCCCCGCAGGTCACGACAGTTACCCCTGCACCGGCACCCGTACCGGTCTTACCGAAAGAGTCTGCTGCGGCGATCTCTGGCAGTAAAGACCACCTGGCGAACATCGACAATAACATGAACTCGTTGGTTGAGATCATGAAGCAGTTCATTGCGGTGCAAACCCAGATGTTGAACAAACCTGCACCGGCGGCACCGCAAGCACCTGCCAGTGGTGCCGGTACACCACCGGTGAGCTTTGCTCGCAAGTACGGTAATGGCTAG

Genome Context

Tertiary structure

PDB ID

a5127c28dc3d749df138c7c6b00bcd63996732d4c4ed2c0369a550e13f2db921

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,4459

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence