Protein

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Genbank accession
QPD06460.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MAAVTQRIPNFLGGVSKQPDDKKILGQVREAINSYPDPTFGLSKRPGTKWLGNLSSTTNEFQNGKWFYINRDETEKYIGVIYGANIKIWNVNNPTATVTVTNNGSGYLTYGSSNAKDSLQVLTVQDTTIVVNNQKTVTTQAAPSFTAKTSATIRLFSAEYGAEYSVTINGTTQTFTTKNAEDPALSNTTTTKVLNADDVLTTIYNNVNSIKPAGSTVTKLKGAIEISGATSAFTITAKGGISGEELAVFQDQVENFSILPAQSIHNRTVKINNTVLKEDSYYAKFIAEDGVSGKGSWEETVAPNVSKGLTASTMPHELVNTALNTFEFRPITWEERLVGDDTTNEHPTFVGKTIQQAFFHNNRLGFLTEDNVSMSQSGEFYNFYHVSALTQADNDPIDISCSSLRPAVLHAVLPAAQGLVLFSKAQQFLLYSDDGILTPKSSVIRTISNYENDEKIDPVDVGTNMVFLSKSPGYTRIYAMATRGQQENPDVLDIGRIVSEWVPDTVTDLVASPQNSFFSMYGPSSNYIYFFRTYVVGDETAMQTWFNWKLHGNVNFFVVDSDDTYIVTYQSNQYTLVKANLTQTPDDAILRADSGQVVQLCLDCYATPSSITYNSTTKVNRCYLKYKDITALSPSVIIADPNNTGESGFTVTPTRGNDGNPYFEFTSNVDYSSSASIVYLGFKYEFDIHLPRLYYQLGENTADYSANLTIARVKIPATTSSNIGFKLKPNGSPEWYDVQSVLAADYYIGDDVPLSSQAVYTLPIHQRNTNFTLRVFSDSPFPVSLTSMMWEGNYSPRYYRRA
Physico‐chemical
properties
protein length:802 AA
molecular weight: 88648,67990 Da
isoelectric point:5,08922
aromaticity:0,11222
hydropathy:-0,30212

Domains

Domains [InterPro]
IPR058003
TTP
1–800
IPR058003
QPD06460.1
1 802
Architecture
TTP
TTP 1-800 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPD06460.1
1 802
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,8929
Central domain 134 332 200 0,2735
C-terminal 333 802 469 0,3989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-332
C-terminal
333-802

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SRP01
[NCBI] 		2781607 Uroviricota > Caudoviricetes > Autographivirales > Nerivirus > Nerivirus SSRP01
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPD06460.1 [NCBI]
Genbank nucleotide accession
MW015080 [NCBI]
CDS location
range 29011 -> 31419
strand +
CDS
ATGGCTGCAGTAACACAACGAATCCCGAACTTCCTTGGTGGAGTATCGAAGCAACCTGACGACAAAAAAATTCTAGGCCAGGTAAGAGAAGCTATTAACTCATATCCTGATCCAACCTTTGGTCTGAGTAAGCGGCCTGGTACAAAGTGGCTTGGTAACCTCTCCTCTACCACTAATGAGTTTCAAAACGGTAAGTGGTTCTACATCAACCGTGATGAGACTGAAAAATACATTGGTGTGATCTATGGTGCGAACATCAAGATCTGGAATGTCAATAACCCTACCGCAACGGTCACTGTTACCAACAACGGATCTGGTTACTTGACCTATGGCAGCTCTAATGCAAAGGATAGTCTTCAGGTACTGACGGTTCAAGATACCACTATTGTGGTCAACAATCAGAAAACTGTCACCACACAAGCAGCACCAAGCTTTACTGCAAAGACCAGCGCTACCATTCGACTGTTCAGTGCTGAGTATGGTGCTGAGTACTCAGTAACCATCAACGGCACCACTCAGACCTTCACCACAAAGAATGCTGAAGACCCTGCACTGAGTAACACAACCACTACTAAGGTTCTGAATGCTGATGATGTGTTGACTACCATCTACAACAACGTCAACAGCATCAAGCCGGCAGGATCAACAGTCACCAAACTAAAGGGTGCTATTGAGATTTCAGGTGCAACCTCAGCATTCACAATCACTGCTAAGGGTGGCATCAGCGGTGAAGAGCTGGCAGTCTTTCAGGATCAGGTAGAGAACTTTTCTATCCTGCCTGCTCAGTCAATCCATAACCGTACAGTCAAGATCAATAATACTGTCCTCAAAGAGGATAGCTACTACGCCAAGTTCATTGCAGAAGATGGTGTATCAGGTAAAGGTAGTTGGGAGGAGACCGTAGCTCCAAACGTCTCCAAAGGTCTTACTGCTTCCACCATGCCGCATGAGTTGGTGAACACAGCACTAAACACTTTTGAGTTTCGACCCATCACATGGGAAGAGCGGCTCGTTGGTGATGACACAACAAACGAACACCCCACTTTTGTCGGTAAGACAATCCAGCAAGCGTTCTTCCATAACAACCGCCTTGGCTTCTTGACTGAGGACAATGTGTCCATGAGTCAAAGCGGTGAGTTCTATAACTTCTACCACGTCTCTGCTCTTACACAAGCTGACAACGATCCCATCGACATCAGTTGCTCCAGCCTGAGGCCTGCTGTACTTCATGCAGTACTACCTGCTGCTCAGGGCCTTGTGCTGTTCAGTAAGGCTCAGCAATTCCTGCTGTACTCCGATGACGGTATCTTGACACCAAAGTCATCCGTGATCCGTACCATCAGCAACTACGAGAACGATGAAAAGATCGACCCCGTAGACGTTGGTACAAATATGGTATTCCTGAGCAAGTCTCCAGGTTATACCCGTATCTACGCGATGGCGACTCGTGGTCAACAGGAGAATCCAGATGTCCTTGATATTGGCCGAATTGTTTCTGAGTGGGTTCCTGATACTGTCACTGATCTAGTGGCATCACCACAGAACTCGTTCTTCTCGATGTATGGTCCGTCCAGTAATTACATCTACTTCTTCCGTACCTACGTGGTCGGAGATGAGACTGCGATGCAAACGTGGTTTAACTGGAAGCTTCACGGCAACGTGAACTTCTTTGTTGTCGATAGTGATGATACCTACATCGTCACCTATCAATCCAACCAGTACACGCTTGTCAAAGCAAACCTCACTCAGACCCCAGACGATGCCATTCTGAGGGCAGATAGCGGGCAGGTGGTACAACTGTGCCTGGACTGTTATGCAACGCCTTCTAGCATCACCTACAACAGTACTACGAAGGTTAATCGTTGCTACCTGAAGTACAAGGATATTACAGCACTCAGCCCATCAGTGATCATTGCTGATCCAAATAATACTGGTGAGTCTGGTTTTACTGTCACACCCACTCGTGGCAATGATGGCAATCCTTATTTTGAATTCACGAGCAACGTTGACTATTCATCTAGTGCCAGTATTGTATATCTTGGCTTTAAGTACGAGTTCGATATTCATCTCCCGAGATTGTACTATCAGTTAGGTGAAAACACAGCCGATTATTCTGCAAACCTTACGATTGCACGTGTAAAGATTCCGGCCACTACATCAAGCAACATCGGATTCAAGCTTAAACCCAATGGGTCTCCCGAATGGTACGACGTTCAATCGGTGTTGGCCGCAGATTATTACATCGGAGATGACGTTCCCTTAAGTAGTCAAGCTGTGTACACACTACCTATTCATCAACGTAATACAAACTTTACTCTGAGAGTCTTTAGCGACTCACCATTCCCTGTGTCTTTGACCTCAATGATGTGGGAAGGGAATTACTCACCACGTTATTATAGGAGGGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
712e8575ecdf9f62266ecf842cca9029a217e67b0b1ecbaf8c752b85efed9633
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3141
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50