Protein

View in Explore
Genbank accession
YP_009614898.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MADLKVGSTTGGSVIWHQGNFPLNPAGDDVLYKSFKIYSEYNKPQAADNDFVSKANGGTYLNKVIFNKGMTVPGAGSGDNGIFAGPGDNATYDTTNMDIVSWYGIGFKSSQGSAARTVVINTRNGDISTKGVVSATGQVRSDAAAPIAANDLTRKDYVDGAINTVTANANSRVLRSGDTMTGNLTAPNFFSQNPASQPSHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:219 AA
molecular weight: 23167,26640 Da
isoelectric point:6,06224
aromaticity:0,09589
hydropathy:-0,35799

Domains

Domains [InterPro]
DC_0466
STR
1–217
DC_0466
IPR005601
STR
56–193
IPR005601
YP_009614898.1
1 219
Architecture
STR
STR 1-217 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009614898.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 119 119 0,4569
Central domain 120 208 90 0,1442
C-terminal 209 219 10 0,9575
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-119
Central
120-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf22
[NCBI] 		2024320 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009614898.1 [NCBI]
Genbank nucleotide accession
NC_042039 [NCBI]
CDS location
range 98020 -> 98679
strand +
CDS
ATGGCTGATTTAAAAGTAGGTTCAACAACTGGAGGCTCTGTCATTTGGCATCAAGGAAATTTTCCATTGAATCCAGCCGGTGACGATGTACTCTATAAATCATTTAAAATATATTCAGAATATAATAAACCACAAGCTGCTGATAACGATTTCGTTTCTAAAGCTAATGGTGGTACTTATTTAAATAAAGTAATTTTTAATAAAGGAATGACTGTTCCTGGCGCAGGGTCAGGTGACAATGGTATTTTTGCTGGTCCTGGTGATAATGCCACGTATGATACTACAAATATGGATATTGTTTCGTGGTATGGTATTGGTTTTAAATCATCACAAGGATCAGCAGCCAGAACTGTGGTAATTAATACACGTAATGGCGATATTAGTACAAAAGGCGTTGTGTCGGCAACTGGTCAAGTAAGAAGTGATGCGGCTGCTCCTATAGCAGCGAATGACCTTACTAGAAAGGACTATGTTGATGGAGCAATAAATACTGTTACGGCAAATGCAAACTCTAGAGTGTTGCGTTCTGGCGACACTATGACAGGTAATTTAACGGCGCCAAACTTTTTCTCACAGAATCCAGCATCTCAACCTTCACATGTTCCACGATTTGACCAAATCGTGATTAAGGATTCTGTTCAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
237d1a922a78f00cf8761e27458ff8e7d5d8776775ef3a9c8f8ce9d21c868826
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7033
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank