Protein

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Genbank accession
QEM42588.1 [GenBank]
Protein name
baseplate protein
RBP type
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MAIETNAVVVTDLNPLYPRDRDYIYEGAAQIRLIKQTLQNTFPNVTEPVDIDSDTFKIMSEKLKFTGDAMDVGGLMIKNVTPGTGDKDVVTKGQMEAFMKNWMENKLYRIGSYYITEEDINPGDSISLGFGSWAKVTGVIMGTGVVNPDGSVPNAQRVEFQAGGTGGRVFNTIRTENVPLMTVNGSSFSLSSNTHSHNMVFGRGDASGHNSSPNWYSPGSGYSQRTENDTHSHTISGSVSLGRDDISRQPINTLPPFRAAHIWRRIS
Physico‐chemical
properties
protein length:267 AA
molecular weight: 29244,31890 Da
isoelectric point:5,86376
aromaticity:0,08240
hydropathy:-0,43858

Domains

Domains [InterPro]
DC_0570
ATT
1–70
DC_0570 DC_0154
IPR053827
ATT
105–266
IPR053827
QEM42588.1
1 267
Architecture
ATT
STR
ATT
ATT 1-70 | STR 71-104 | ATT 105-266 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SGF2
[NCBI] 		2601630 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus SGF2
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEM42588.1 [NCBI]
Genbank nucleotide accession
MN148435 [NCBI]
CDS location
range 17881 -> 18684
strand +
CDS
TTGGCTATCGAAACTAATGCGGTAGTTGTTACCGATTTAAACCCACTCTATCCTAGAGATAGGGATTATATCTATGAAGGGGCGGCTCAAATCCGCCTCATTAAACAAACACTACAGAACACATTCCCCAATGTCACAGAACCAGTTGATATTGATTCTGACACTTTTAAGATTATGTCAGAGAAGCTCAAGTTTACTGGTGATGCAATGGATGTTGGTGGTCTGATGATTAAGAACGTCACTCCGGGGACTGGTGACAAAGATGTTGTTACTAAGGGTCAGATGGAAGCGTTCATGAAGAACTGGATGGAGAATAAACTCTATCGAATTGGCTCTTACTACATCACTGAAGAAGATATTAACCCCGGTGATTCTATCTCCTTAGGGTTTGGCTCTTGGGCTAAAGTGACTGGTGTTATCATGGGTACTGGTGTTGTAAACCCTGATGGTTCTGTTCCTAATGCTCAGAGAGTTGAGTTCCAAGCAGGCGGTACAGGTGGTCGTGTCTTTAATACCATTCGTACAGAGAACGTACCTTTGATGACAGTTAATGGCTCCAGCTTCTCCTTATCCAGTAACACCCACAGTCACAACATGGTGTTTGGTCGTGGGGATGCTAGCGGTCATAACAGCTCACCTAACTGGTACAGTCCGGGTAGTGGTTATAGTCAGAGAACAGAGAATGACACACACTCTCATACAATCTCTGGTAGTGTGAGTCTTGGTCGTGATGACATTTCTCGTCAACCTATTAACACTTTGCCACCATTCAGAGCGGCTCACATTTGGAGACGTATTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4e7716870736d87c808c9e48d59e1f359a375b764f38288162cb2395241ed001
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of SGF2, a novel phage infecting Shigella flexneri Lu,H., Liu,X., Lu,M. and Liu,H. 2022-05-06 — GenBank