Protein

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Genbank accession
YP_053016.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MADFSQTSFKGGVIAPRLQFNEYESAYHHSIEDAVNFVVTEQGSLITRCGSEEVGLCQDGEVRLFRLPAIDAPSNDIIVEVGNANIAVWVNDVRQVVAATPSEWRNTLDRIQTAYDTIGDDLGAANTGRLIMVHPALQPKRLYRDNNNAWKFVNMHTGAVPAEWSSSNYPQTVGIFQNRVWYVGSPVHRTYFWATRAGKLEDIAPSTANNPNDPISFVGIMEGTPCWIIASSDVLTIGTTINDYQLAASTGVSVTAATAILRRSSVQGTAAVQGIPAEEQVIFCSRNKSKVYAMNYVREQDNWIPDEMSSQAQHLFTPISSARGASVRRVAYISDAAKSLWVVLENGKINYCCFDRTTDTKAWTQLELSGGKVIDIAAAFNPDSDYAYVAVVRSKVVNGAQKNYTVLEKIPSPRTDWKRADGWVVAQVNQNGDVLNLDRYIGRTAVIFSKYGLEAEVEVNNIGLTHRINGYDSNTTYYVGYKMDSYFRTLTPSNGDMKKSMFGSKMRVSKVQLALFDSIEPTVNGEPADDRSTDDIMDARLLDFSSNSNSGNGTRLVDYNPLGWEEDGKVNVSVEQPFLCEVVGIFSVVQSNKV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65581,68770 Da
isoelectric point:5,18834
aromaticity:0,09428
hydropathy:-0,26010

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_053016.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 488 488 0,8403
Central domain 489 583 96 0,0730
C-terminal 584 594 10 0,9423
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-488
Central
489-583
C-terminal
584-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP5
[NCBI] 		260827 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_053016.1 [NCBI]
Genbank nucleotide accession
NC_005891 [NCBI]
CDS location
range 11568 -> 13352
strand +
CDS
ATGGCAGACTTCAGTCAGACTAGCTTCAAGGGGGGCGTAATTGCTCCCCGACTCCAGTTCAACGAATATGAGTCGGCGTACCATCACTCTATCGAGGATGCCGTCAACTTTGTCGTCACTGAACAGGGAAGCTTAATAACACGATGCGGCTCGGAGGAAGTTGGATTGTGCCAAGATGGCGAAGTCCGCCTTTTCCGATTGCCAGCTATTGATGCTCCTTCTAATGATATTATCGTAGAGGTGGGCAACGCCAACATAGCTGTTTGGGTCAATGACGTGCGTCAAGTCGTGGCTGCCACCCCCAGTGAGTGGCGCAATACGCTTGACCGAATCCAAACGGCATATGATACGATTGGCGATGATTTAGGCGCAGCTAACACAGGGCGCTTAATCATGGTTCACCCCGCGCTGCAACCTAAGCGATTGTATCGCGACAATAACAACGCGTGGAAATTTGTCAACATGCACACGGGCGCGGTTCCTGCTGAGTGGTCATCCAGTAACTACCCTCAGACAGTGGGCATTTTCCAAAATAGGGTTTGGTATGTGGGTTCCCCCGTTCATCGGACTTATTTTTGGGCTACGCGAGCAGGTAAGTTGGAAGATATCGCACCTAGCACAGCCAACAACCCTAATGACCCTATTAGCTTCGTGGGCATTATGGAGGGGACACCTTGTTGGATTATCGCATCTTCTGACGTGTTGACCATCGGAACAACAATAAACGACTACCAGTTAGCCGCATCCACTGGTGTGTCGGTCACAGCGGCGACGGCCATATTGCGTCGTTCGTCTGTTCAGGGGACGGCGGCAGTCCAAGGAATTCCTGCGGAGGAGCAAGTTATTTTCTGCTCCCGCAACAAGTCCAAAGTGTATGCTATGAACTACGTCAGGGAACAAGATAACTGGATTCCTGACGAAATGTCGAGCCAAGCACAGCACTTATTTACGCCGATTTCGTCTGCGAGAGGTGCTAGTGTCCGTAGAGTCGCCTACATCTCAGATGCGGCGAAATCCCTTTGGGTTGTGTTGGAGAATGGCAAAATCAACTATTGTTGTTTTGACCGCACGACGGACACCAAAGCTTGGACTCAACTAGAACTTTCAGGCGGAAAAGTCATTGACATTGCTGCTGCCTTCAATCCGGATTCTGACTACGCTTACGTTGCTGTGGTCAGAAGCAAGGTGGTAAACGGAGCACAAAAGAATTACACCGTACTGGAGAAAATCCCGTCGCCTCGCACTGATTGGAAGAGAGCGGACGGATGGGTCGTGGCACAAGTTAACCAAAATGGCGACGTGCTGAACTTAGATAGATACATCGGCAGAACGGCAGTAATCTTTAGCAAGTACGGATTAGAAGCTGAGGTTGAAGTAAACAACATTGGTTTGACGCACCGAATCAACGGCTACGATTCGAATACCACATATTACGTGGGGTATAAGATGGATAGCTACTTCCGAACATTAACTCCATCAAACGGCGACATGAAAAAGTCAATGTTCGGAAGCAAAATGCGAGTCAGCAAGGTGCAATTGGCTCTTTTTGATAGTATAGAACCAACTGTAAACGGCGAACCTGCCGACGACCGCAGCACGGACGATATTATGGATGCGAGGCTGTTAGATTTTTCGTCCAACTCGAACAGCGGCAATGGCACAAGATTGGTTGACTACAATCCTTTGGGTTGGGAAGAAGACGGCAAAGTGAATGTGTCCGTTGAACAACCTTTCCTGTGCGAAGTAGTCGGTATTTTTTCAGTAGTTCAGTCCAACAAGGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
66957d37848a4166bd5412b2fdc647d1a7859adb0d16b8cbe15ab00c325ed77d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8611
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50