Protein

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Genbank accession
YP_009801098.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MALISQSIKNLKGGISQQPDILRFAEQGAEQVNAWSSETEGLQKRPPLLFTKAIGNATALGTAPYVHLINRDEFEQYFAVFTGTDVKVIGMDGTQYTVRGSREYITTAKPREDLRMITVADYTFIINRTVTVKAGTALSNGGTFREKGDALVNVRGGQYGRTLVLTINGTEAAKYEIPDGSQPAHVKNTDAQFLAEELAKQARLVFPTWTFTVGQGYIHIIAPANVTIDSLVTKDGYSDQLINPVTHFAQTFARLPLNAPDNYMVKIVGDTSRTADQYFVVYDATRKVWRETVGWNELVDWTDTTMPWTLIRAADGQFDLKTQDWTNRKSGDDDTNPYPSLVDSQINDVFFFRNRLGFLTGENIVMSRTARYFDFFPASVANLSDDDPIDVAVSHNRVSTLKYAVPFTEELLLWSDEAQFVLGASGVLTSRSVELNLTTQFDVQDLARPYGIGRHIYFASPRATFSAINRYYAVQDVTRVKSSEDATAHVPSYIPNGVFSIHGSSTENYAAVLSSGAPSKVFIYKFLYIEEQVRQQSWSHWDFGDNVTIYAATAIGSQMFLLMSNGAATWLGQVSFTKDTVDIESEPYRIYLDNKVEYQIPATSYNIDTNLTTIDIRQVYGMASSKGTISIVEMDGRISVIPEPTGTWVLNPLIELPGDLSTQVVFVGFNIPFVYEFSKFLIKKTADDGSSATEDIGRLQLRRAWLNYEESGAFTIQVENQSRTFQYEMAGGRLGSNLLRVGRLNVGTGQYKFPVTGNAVFNTVRIVSDTTTPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:792 AA
molecular weight: 88115,91170 Da
isoelectric point:5,22733
aromaticity:0,11237
hydropathy:-0,20088

Domains

Domains [InterPro]
IPR058003
TTP
1–792
IPR058003
YP_009801098.1
1 792
Architecture
TTP
TTP 1-792
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009801098.1
1 792
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9787
Central domain 142 345 205 0,0913
C-terminal 346 792 446 0,1970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-345
C-terminal
346-792

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Jarilo
[NCBI] 		2163634 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Jarilovirus
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009801098.1 [NCBI]
Genbank nucleotide accession
NC_047963 [NCBI]
CDS location
range 24617 -> 26995
strand +
CDS
GTGGCACTTATCAGTCAAAGCATTAAGAACCTCAAAGGAGGCATTAGCCAGCAGCCAGATATCCTAAGGTTCGCTGAGCAGGGAGCAGAACAGGTTAACGCTTGGTCATCTGAAACAGAGGGACTCCAGAAGCGTCCACCACTGCTCTTTACGAAAGCTATAGGGAACGCTACAGCCCTCGGGACGGCACCTTATGTCCACCTAATTAACCGCGATGAGTTCGAGCAGTATTTCGCAGTGTTCACAGGTACAGACGTAAAGGTCATCGGGATGGATGGCACGCAGTACACGGTGAGAGGTAGTCGTGAGTATATCACCACAGCGAAGCCCCGAGAGGACCTAAGGATGATTACGGTAGCTGACTACACGTTCATAATTAACCGCACAGTGACCGTTAAGGCGGGCACAGCGCTGTCCAACGGTGGAACCTTCAGAGAGAAGGGTGATGCTCTCGTTAACGTGCGTGGCGGTCAATATGGACGCACTCTGGTTCTAACCATTAATGGGACCGAAGCGGCGAAGTATGAGATTCCTGATGGGAGTCAGCCAGCACACGTTAAGAATACTGATGCGCAATTCCTTGCTGAGGAACTCGCTAAGCAGGCGCGTCTGGTGTTCCCTACGTGGACCTTTACGGTAGGCCAAGGGTACATCCATATCATCGCCCCAGCCAACGTAACGATCGATTCTCTGGTGACCAAGGATGGCTATAGTGACCAGCTGATTAACCCGGTGACTCACTTTGCGCAGACCTTTGCGAGACTCCCGTTGAATGCTCCAGATAACTACATGGTCAAGATTGTAGGTGATACCTCACGGACAGCTGACCAGTATTTCGTGGTCTATGATGCAACTCGTAAGGTCTGGCGTGAAACTGTAGGTTGGAATGAGCTGGTTGATTGGACCGACACCACAATGCCTTGGACCCTCATAAGGGCAGCTGATGGGCAGTTCGACCTGAAGACTCAGGACTGGACTAACCGTAAATCAGGTGATGATGATACAAACCCATACCCATCTTTAGTGGACTCACAGATTAACGATGTGTTCTTCTTCAGGAACCGTTTAGGTTTCCTCACAGGTGAGAACATCGTGATGTCACGTACCGCTCGTTACTTCGACTTCTTCCCGGCTAGCGTAGCGAACCTGAGTGATGATGACCCGATTGACGTAGCTGTAAGTCACAACCGAGTGAGTACCTTAAAGTACGCTGTACCGTTCACTGAGGAGTTGCTGCTATGGTCTGACGAAGCACAGTTCGTATTGGGAGCCTCAGGGGTCCTAACAAGCCGTTCGGTTGAACTTAACCTGACCACTCAGTTTGACGTTCAGGACTTAGCGAGACCCTATGGAATCGGTCGGCATATCTACTTTGCCAGCCCACGGGCGACCTTTAGTGCCATCAATCGATACTATGCGGTTCAGGATGTGACCCGAGTGAAATCCTCAGAGGATGCTACCGCCCACGTCCCGAGCTACATCCCAAACGGGGTCTTCAGTATCCACGGGTCCAGCACTGAGAATTACGCAGCAGTGTTATCGTCAGGTGCACCAAGTAAAGTCTTCATCTATAAGTTCCTCTACATTGAAGAGCAAGTGAGGCAGCAATCATGGTCTCATTGGGACTTTGGTGACAACGTGACTATCTATGCAGCAACTGCGATTGGCTCTCAGATGTTCCTATTGATGTCTAATGGTGCCGCTACATGGCTCGGACAGGTCAGTTTTACGAAGGATACAGTAGACATTGAGAGTGAGCCTTATCGAATCTACCTTGACAATAAAGTTGAGTATCAGATTCCAGCGACTAGCTATAACATTGATACCAACCTGACGACCATCGACATTCGACAGGTCTATGGTATGGCTAGCTCTAAGGGCACTATAAGCATCGTTGAGATGGATGGGCGCATCAGTGTTATCCCTGAGCCTACAGGAACGTGGGTACTGAATCCACTAATTGAACTACCGGGAGACCTGAGTACACAAGTTGTCTTCGTAGGGTTCAACATCCCGTTCGTCTATGAGTTCTCTAAGTTCCTCATTAAGAAGACCGCCGACGACGGGTCTAGTGCGACTGAGGACATTGGGCGCTTGCAGCTTCGTCGAGCATGGCTGAATTACGAGGAGTCAGGAGCCTTTACGATTCAAGTAGAGAACCAGAGTCGAACATTTCAGTATGAGATGGCGGGTGGTCGGTTAGGCTCTAACTTACTCCGTGTAGGCAGACTGAATGTAGGGACTGGTCAGTATAAGTTCCCTGTAACAGGTAACGCCGTGTTCAACACTGTGCGAATCGTTAGTGACACCACGACTCCGCTGAATGTCATTGGCTGTGGCTGGGAAGGTAACTACATCAGGCGCTCTAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a7df0310a9efe746b5ad8024c1d71c79708dfad38c62c14275b14e663d603921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank