Protein

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Genbank accession
AUR82210.1 [GenBank]
Protein name
pectin lyase fold/virulence factor
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MIKKLFNKFIENLNKETEFDESRRRVVKGVAGLAALAAISPSLVVDGKQFVDFSSSDFERMCASGVIENMTFYLDRTTKLEGMNGLTIRNCKFIALEGFEGESMFYLGDCSNCVITDCHLDVGNIANTAMTFGGLPC
Physico‐chemical
properties
protein length:137 AA
molecular weight: 15102,23560 Da
isoelectric point:4,98907
aromaticity:0,09489
hydropathy:0,07299

Domains

Domains [InterPro]
IPR011050
STR
66–125
IPR011050
AUR82210.1
1 137
Architecture
STR
STR 66-125 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR82210.1
1 137
Domain Start End Length (AA) Confidence
N-terminal 1 44 44 0,4956
Central domain 45 126 83 0,9920
C-terminal 127 137 10 0,1667
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-44
Central
45-126
C-terminal
127-137

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.021.C._10N.222.51.F9
[NCBI] 		1881417 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR82210.1 [NCBI]
Genbank nucleotide accession
MG592405 [NCBI]
CDS location
range 42010 -> 42423
strand +
CDS
ATGATTAAGAAGTTATTCAACAAGTTCATCGAGAACCTGAACAAAGAAACTGAGTTCGATGAATCAAGACGACGTGTTGTCAAGGGTGTCGCTGGTCTGGCTGCATTGGCTGCGATCAGTCCTTCGCTGGTGGTCGATGGTAAACAGTTCGTTGACTTCTCAAGCAGCGACTTCGAGCGCATGTGTGCATCGGGTGTTATTGAGAACATGACATTCTACCTAGACCGTACAACCAAACTGGAAGGTATGAATGGGTTGACTATTCGCAACTGCAAATTCATTGCACTCGAAGGTTTTGAAGGTGAGTCAATGTTCTATCTGGGCGATTGTTCAAACTGCGTAATCACCGATTGTCACCTTGACGTAGGTAATATCGCAAACACTGCTATGACGTTCGGAGGTCTACCATGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b80519e79a76dcbaddc6f0c735b115f09233a30ce5b137a15c4bbf9db8e494a7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6100
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank