Protein

View in Explore
Genbank accession
WPH61350.1 [GenBank]
Protein name
non-contractile tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYALDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTTKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARKIVNLADGVNDGDAVNLRQQKQWAGSALNQAQAAAASAQAAATNNAQSLVNNQQSYQNLVAAQQQAANSANSASASQTSRLASEAARDASAAARDLSQAWSSKAEDQVVASGLYSSYHYSRKSAASATASQTSATNSANSASFSTTEANRATTQADRAKTEADKLGNFNGLAGALNSVVGTTVTWKGDQVSLSGKYISRSDGEANFSFAKADGSDLIRFVRTADRTVHLFGDAGGDGDRMTWSQTGVTIPKALTVNGFTTLAGAQVNGSISMTGSLLAAGNVRANGGNLQVFAAASNANSHVWFYNSDGATRGIIYGGTDNVMRLQAGTASVAQQWDTAGNSTITGNLNVVQGISATRGTMQSTFYEGSGISSGSYGQCQLQLQGTGGGVAKLGFHNAGRVALTLWLTDNNELQIMKNSGVNTEIIHNGNLGAWNVSAMSAEVIGQLSFLQNVSGSNLDSNSQLAGGNLRKSTHNNVSGAPGGTWRSMGWSNNGGVSIWQRVA
Physico‐chemical
properties
protein length:637 AA
molecular weight: 66891,68960 Da
isoelectric point:7,79863
aromaticity:0,06750
hydropathy:-0,30188

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0044
STR
1–636
DC_0044
WPH61350.1
1 637
Architecture
ATT
STR
ATT 1-131 | STR 132-636 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPH61350.1
1 637
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9245
Central domain 262 460 200 0,3422
C-terminal 461 637 176 0,9441
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-460
C-terminal
461-637

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiPst2111
[NCBI] 		3053876 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas syringae pv. tomato
[NCBI] 		323 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae group genomosp. 3

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPH61350.1 [NCBI]
Genbank nucleotide accession
OQ953985 [NCBI]
CDS location
range 35476 -> 37389
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACGCTCTCGACGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTATCTCGCTCGGAAGTTCGTTGTGGTCACCTTGATTGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACTACCAACACGACCATCACCACGACCAAGGCATGGGGACCGGCTGATAACTTCGACCTGATCGAGATTCGCCGACTGACCTCCGCAACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAACATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGTGACCTCGATGCTCGTGCCCGTAAGATCGTCAACCTCGCCGATGGCGTGAACGATGGTGATGCGGTCAACCTGCGCCAGCAGAAACAATGGGCAGGCTCTGCGTTGAACCAAGCACAGGCTGCTGCTGCATCTGCACAGGCTGCTGCCACGAACAACGCCCAATCGCTGGTCAACAACCAACAGTCCTATCAGAACCTCGTTGCTGCCCAACAACAAGCTGCGAACTCTGCGAACTCTGCGAGTGCCTCTCAGACATCCCGACTTGCCTCTGAGGCTGCCCGTGATGCTTCTGCTGCTGCCCGTGACTTGTCCCAAGCGTGGTCCTCGAAGGCTGAGGATCAGGTCGTTGCATCTGGCCTCTATTCGTCCTACCACTACAGCCGCAAGTCGGCAGCGAGTGCCACGGCAAGTCAGACCTCTGCGACCAACTCTGCGAACTCTGCGAGTTTCTCCACGACCGAGGCCAACCGGGCAACCACTCAGGCCGACCGTGCGAAGACCGAGGCTGACAAGCTGGGTAACTTCAACGGACTCGCTGGTGCTCTGAATTCCGTTGTCGGAACCACTGTGACTTGGAAGGGCGACCAAGTGAGCCTATCAGGGAAGTACATCTCCCGTAGTGACGGTGAGGCCAACTTCTCGTTTGCCAAGGCTGATGGGTCCGACTTGATCCGCTTCGTCCGTACCGCTGATCGTACCGTCCACCTTTTTGGTGACGCTGGTGGTGATGGTGATCGGATGACGTGGAGCCAAACCGGTGTGACCATTCCCAAGGCCCTGACTGTTAACGGCTTCACCACGTTGGCAGGCGCTCAGGTAAATGGCAGCATCTCGATGACCGGTAGTCTTCTCGCAGCAGGTAACGTTCGGGCCAATGGAGGAAACCTTCAGGTCTTCGCCGCTGCTTCTAACGCAAACTCACACGTCTGGTTCTACAACTCTGATGGAGCGACTCGCGGGATCATCTACGGTGGTACTGACAATGTAATGCGTCTTCAAGCTGGTACTGCCAGTGTCGCCCAACAGTGGGATACCGCTGGTAATAGCACCATCACCGGGAACCTGAACGTTGTCCAAGGCATCTCCGCTACCAGAGGCACCATGCAGTCCACCTTCTATGAAGGTTCTGGTATCTCTTCTGGCTCCTACGGGCAATGCCAGTTGCAGCTTCAAGGTACTGGTGGTGGTGTGGCCAAACTGGGCTTCCACAACGCTGGTCGAGTAGCTCTGACCCTCTGGCTGACCGACAACAACGAACTCCAGATTATGAAGAACTCTGGAGTCAACACCGAGATCATCCACAACGGCAACCTCGGGGCATGGAACGTGTCCGCGATGTCCGCTGAAGTGATTGGCCAACTGTCGTTCCTCCAGAACGTCTCTGGGTCGAACCTCGATTCCAACTCGCAGCTCGCTGGCGGCAACCTTCGGAAGTCCACTCACAACAACGTGAGCGGGGCACCGGGTGGTACATGGCGCTCTATGGGCTGGTCCAACAACGGCGGCGTTTCCATCTGGCAACGTGTCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
019e685ca9c60cb5e20855b77a2ea4ec2aed8924a42f80cf8ed5feeb1700e099
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6595
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of lytic bacteriophages that infect Psudomonas syringae pv. tomato, causal agent of bacterial speck on tomato plants Contreras,J., Trigo,C. and Castillo,A. 2022-04 — GenBank