Protein

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Genbank accession
QVJ07693.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTQYIDTVTDELTNLPVPGAEVYIYDDNNNLATLYDADGNEIDNPLTTNEQGEYSFYSPVTELTAVVYYSSRLRRRLRLLVGGGYSVLALASAQASLAGSGALAAANTGAGLADTSIGQTFWIDNGDGTGTTYRHDAGPVATEIGKFIIDPTDEGAANLIGMPQGKVGEAIKFVTPEMHGASALIANNAAALESAAADAVARGVELVSSAVYPTTATVNLPDGLVMRGLGMMQSGISSTATPAVVCGKGVSLSDMKIETTNAGRVVLWTLDTDAPSIDRCFLNGRIYSRNALNEEHSGPKISRCVVTCDFGSDYDGVQQYDVFSIYGLFGASITDCDILTNNVHRLCKVTDISTVTDPAQEVTAYNSRAFIFSRNRVRGVGGKQVFDLYSGTSGANISDNHFELSDDLTDSGHRWEVVIENKSAANARDGYDIGSALVVHGNTGYIGRCPFVRLQGSYGITQSGFTGTRRNTVKLTCNDIRRTVDNADPMVDIRFFNEVFSNGNSWEIPSGTANRSVAGYYSNENVIVGSGDVYSGGCVEVASQTANAAGLTFTGALGTFTMGGTVRNFDAKGAVRLFLIVSAENICIDGLKSRPKSSPTQLCRAVHCESNTAITQLDIVNCNATHPSGSSVAPVLDTAATAAYGVIRDNNWQPRFRGYVTSLPGSGNYLRGDTLRQISPSIGSPVEWTCHTSGSPGGWRVSAYIMGRGTTAQRPTLTANDSGVQYEDTTLNAGGQLIRWNGTNWKDVAGTTV
Physico‐chemical
properties
protein length:753 AA
molecular weight: 79870,80340 Da
isoelectric point:4,99361
aromaticity:0,07835
hydropathy:-0,15378

Domains

Domains [InterPro]
IPR008969
ATT
7–84
IPR008969 DC_0660
IPR008969
ATT
7–75
IPR008969
QVJ07693.1
1 753
Architecture
ATT
STR
ATT 7-84 | STR 136-753
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QVJ07693.1
1 753
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,9885
Central domain 188 650 464 0,9850
C-terminal 651 753 102 0,9860
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-650
C-terminal
651-753

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingopyxis phage VSN-002
[NCBI] 		2835890 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sphingopyxis sp.
[NCBI] 		1908224 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Sphingomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVJ07693.1 [NCBI]
Genbank nucleotide accession
MZ127829.1 [NCBI]
CDS location
range 23985 -> 26246
strand -
CDS
ATGACGCAGTATATCGATACCGTCACCGATGAACTGACCAACCTCCCGGTTCCGGGGGCGGAGGTGTATATCTATGACGACAACAACAATCTCGCCACGCTTTACGACGCCGACGGGAACGAGATCGACAACCCGCTGACGACGAACGAGCAGGGGGAATACAGCTTCTATTCGCCGGTCACGGAATTGACCGCAGTCGTCTATTACAGCTCCCGCCTCCGCCGCCGTCTCCGCCTGCTTGTCGGCGGGGGCTATAGCGTTCTGGCACTGGCGAGCGCTCAGGCATCGCTTGCAGGATCGGGGGCGCTCGCCGCTGCCAACACGGGGGCAGGACTCGCCGATACCTCAATCGGGCAAACCTTCTGGATCGACAATGGCGACGGCACGGGCACGACCTACCGCCACGACGCGGGGCCGGTCGCGACCGAGATCGGCAAGTTCATCATCGACCCGACCGATGAGGGGGCCGCCAACCTGATCGGGATGCCGCAGGGCAAGGTCGGCGAGGCCATCAAGTTCGTCACCCCTGAAATGCATGGCGCGTCCGCACTGATCGCGAACAACGCGGCGGCGCTGGAATCCGCCGCCGCCGATGCGGTCGCGCGCGGCGTGGAGCTGGTATCTTCCGCTGTCTACCCGACCACGGCAACGGTCAACCTCCCCGACGGGCTGGTCATGCGTGGCCTCGGTATGATGCAGTCGGGCATTTCCTCGACCGCGACCCCGGCAGTCGTCTGCGGCAAGGGCGTCTCGCTCTCCGACATGAAAATCGAGACGACGAACGCTGGCCGCGTCGTGCTGTGGACGTTGGACACCGATGCACCTTCTATCGATCGCTGCTTCCTCAACGGTCGGATCTACAGCCGCAACGCACTGAACGAGGAGCATAGCGGCCCGAAGATTTCGCGCTGCGTCGTTACCTGTGATTTCGGTTCGGACTATGACGGCGTGCAGCAATACGACGTTTTCTCGATCTACGGCCTGTTCGGGGCAAGCATCACCGATTGCGATATCCTGACCAACAATGTCCATCGCCTCTGCAAGGTGACGGATATCTCGACGGTGACCGATCCCGCGCAGGAGGTGACCGCATATAACAGCCGCGCCTTCATCTTCTCGCGCAATCGGGTTCGCGGCGTGGGCGGCAAGCAGGTGTTCGACCTCTATTCGGGGACCTCGGGCGCCAACATTTCCGACAATCATTTCGAGCTATCGGACGACCTGACCGATTCCGGACATCGCTGGGAAGTGGTGATCGAGAACAAGAGCGCCGCGAATGCTCGGGACGGATATGATATCGGCTCGGCGCTCGTTGTGCACGGCAACACCGGCTATATCGGCCGCTGCCCGTTCGTCCGCTTGCAGGGCAGCTACGGCATCACGCAAAGCGGCTTCACGGGCACGCGACGGAACACGGTCAAGCTGACGTGCAACGATATCCGCCGCACGGTCGATAACGCCGACCCAATGGTTGACATCCGCTTTTTCAACGAGGTCTTTTCCAACGGCAACAGCTGGGAAATCCCCTCGGGCACGGCTAACCGCTCGGTCGCTGGCTACTACTCCAACGAGAATGTCATCGTCGGGTCGGGAGACGTCTATTCGGGCGGCTGTGTGGAGGTCGCAAGCCAGACCGCGAACGCTGCAGGCCTGACGTTCACCGGAGCGCTCGGCACGTTTACCATGGGCGGAACCGTCCGCAATTTCGACGCAAAGGGCGCTGTCCGCCTGTTCCTGATCGTCTCTGCGGAAAACATCTGCATCGACGGCCTCAAGAGCCGCCCGAAGTCGTCGCCGACGCAGCTTTGCCGCGCGGTCCACTGCGAGAGCAACACCGCGATCACGCAGCTCGATATCGTCAACTGCAACGCGACGCACCCCTCGGGGAGCAGCGTCGCGCCGGTTCTGGATACGGCAGCCACGGCGGCCTATGGCGTCATCCGCGACAACAACTGGCAGCCCCGGTTCCGCGGTTACGTCACCTCGCTTCCCGGTTCGGGCAACTATCTGCGAGGCGATACCCTTCGCCAGATATCGCCCTCTATCGGTTCCCCGGTGGAATGGACGTGTCACACCTCGGGTTCGCCGGGGGGGTGGCGTGTCAGCGCTTACATCATGGGCAGGGGGACCACGGCACAGCGCCCGACGCTCACCGCCAACGATTCCGGGGTCCAGTACGAGGATACGACCTTGAACGCAGGCGGTCAGCTGATCCGCTGGAACGGCACGAATTGGAAAGACGTCGCGGGAACGACGGTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9fecbf17a30b9aa08c6f1d41857a6ae45d8fc93d02a7c50602d11da84da8cfd7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7144
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a phage infecting Sphingopyxis sp. Shen,S., Anazawa,T., Matsuda,T. and Shimizu,Y. 2022-07-21 — GenBank