Protein

View in Explore

Genbank accession

XTP78955.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MTDYTPILKLPEVAPNQNQKEDTINTALAILESAMNNVKPYTLTGAGPLALNDDDFTRYFLHRFSGQTAAYEITVPAVQPRWFAVENAGSFAITLRCFGVSGGLPFEVPPGKIGLVVSDGADLRTIVPQSGMGLLQDLSDVSGVPTDKQVLRYDAATSLWKPSTFLISFGELTDTPNNYLGANGKIVAVNAAGDGLEFVSSAANVNSFVDLDDTPSSYSGAAGLTVKVSSGGTGLIFAAPTFLEASDTPNSYSGQAKKFARVKTDMSGLEFDSVRLTDLSDGPGTYAGFGGMFVRVKNDGTGFEFNTGSGGPDNFLDLTDTPDAYTGQGNKAVRVKTDVSGLEFYTPTLVGLGDTPANYTGAANKILRVNGSGNAVVFSTLAFGELSNVASGEANKWLRWNPAGNGIINDTPTFLGLADTPNAYTGNEGKFVYVKGDGSGLGFSASSVNLSYLELNDTNDTTYSGKTDMVPIVTIVGSTPVLQLGFHKFSKLSGISLSSPTEGQILGYDADLGLWTNIDAPEGGGGGSIGVPSYGPHAYWRLLLHTTDGSTSQYGIQEIQFKHSKTGADLANGGTPSASSDQFGTVAGAFDNVISGAWFSNTPNDGEWIAYHFTTPADVRYVTLQGSQSQPDTSPRSFSVQYSDDGVAYTTAWEVTGQNGWAPGQTREFHAPIDLFFTDLADAPPSYIGQALKVLRVNAGETALELFTLPSIPTKLDDLTDVQVTGTPTDGQVLAWDDATGVFKPTSVPGITPTAFTDLTDAPTSYAGEGGNAVRVKMTEDGLEFYTPGTGGGGGGGSYRGAWASGSEQVILNFENGSLNPAFTYDAAGFNVVIQPDTVSGTTLALKFRPIGNGATCYCDLPVEDVVGIANFKVRYKVSSEGPDFFRVIQDGTTTLLTDSGNTGLYEEGSFPVTGDHTLRFQYSKDGSLAVGDDTVYISQITYFKTLTNPYVYGDTITYAGSYWLCRVGGTSEEPGVGDDWIKLPDTLAQLDDVDLTSSPPSNGQALVFDGATNKFKPGTVAGGSGGGNKYNIGVTPRTRLHRAAIQSIPTSTWTAVQWDTEAEDAANAFTSGANTRVTIPAGVKAARVTAYANWVTPVTTSIVGLALRRNGVEIGSTGGSPVAASRAGLYQSHLNFTSEWFPVTQGDYYELFVYHDSGSNRDLNGPVTNFGENTYLQFEWDEGISPSAVEAGDFHGPHQGWRMLTIDSQTGTYATFGELKFFDRSGVQIATTGGKLFDTYSHPSYPVQQAFDGNNTTYWSSLQQTSTGQLAGPGYIFAAPVDVGSIKLTSTSTDFNSTNSPKNFAIQYTDDGGASWFTYVTFSNQTGWGDREERTFVLPTSGIARVGGARALDELKDVTIGTPKNGDLLTYDATTSTWKQKSRWGYAPPVAADFPTAVGTVPLTLTYDDEVGLMIDCGASASGDVQRAVLKALPTGDWNLTVKITDHLAPVYYNAVGIMLREAATGKIVLFGCEVAGSSFSVPVRQVRFSRLAGLSGFTANDYARPSPSLPQWYRISLTGSTLKAEVSADGKFWRTVVSQAVTTGFTTKPDQIGLGCSLNYTDSQSAMFSVPYWSQSW

Physico‐chemical properties

protein length:	1579 AA
molecular weight:	167625,31350 Da
isoelectric point:	4,58341
aromaticity:	0,10830
hydropathy:	-0,19924

Domains

Domains [InterPro]

DC_1385
ATT
1–207

DC_1385 DC_1385 DC_1385 DC_1385 IPR000421 DC_1461 G3DSA:2.60.120.260

DC_1385
ATT
201–241

DC_1385 DC_0349 DC_1385 DC_1385 DC_0349

G3DSA:2.60.120.260
STR
563–681

G3DSA:2.60.120.260 IPR008979

IPR008979
STR
576–659

IPR008979

IPR000421
RBD
579–673

IPR000421

XTP78955.1

1 1579

Architecture

ATT

STR

ATT

ATT 1-752 | STR 753-890 | ATT 891-1569 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1385	ATT	DC_1385	1	207	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_1385	ATT	DC_1385	201	241	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_1385	ATT	DC_1385	238	276	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_0349	ATT	DC_0349	272	313	Novel HMM	DC_0349	N-terminal	Low	Positional only	13 proteins / 13 hits
DC_1385	ATT	DC_1385	305	351	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_1385	ATT	DC_1385	346	389	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_1385	ATT	DC_1385	379	484	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
DC_1385	ATT	DC_1385	483	752	Novel HMM	DC_1385	N-terminal	Low	Positional only	25 proteins / 25 hits
IPR000421	RBD	DC_0058	549	653	InterPro cluster	Coagulation factor 5/8, C-terminal domain	C-terminal	Low	Positional only	33 proteins / 66 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	563	681	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	576	659	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
IPR000421	RBD	DC_0058	579	673	InterPro cluster	Coagulation factor 5/8, C-terminal domain	C-terminal	Low	Positional only	33 proteins / 66 hits
DC_1461	STR	DC_1461	673	973	Novel HMM	DC_1461	Central	Low	Positional only	16 proteins / 16 hits
DC_0349	ATT	DC_0349	891	1569	Novel HMM	DC_0349	N-terminal	Low	Positional only	13 proteins / 13 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1232	1378	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	1241	1342	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XTP78955.1

1 1579

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	1192	1192	0,7547
Central domain	1193	1416	225	0,3228
C-terminal	1417	1579	162	0,6092

Note: Constraints were applied during segmentation.
Fixed 217 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-1192

Central
1193-1416

C-terminal
1417-1579

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Caulobacter phage RBC8 [NCBI]	3411845	Viruses > unclassified bacterial viruses >
Host	Caulobacter crescentus CB15 [NCBI]	190650	Bacteria > Proteobacteria > Alphaproteobacteria > Caulobacterales > Caulobacteraceae > Caulobacter

Coding sequence (CDS)

Genbank protein accession

XTP78955.1 [NCBI]

Genbank nucleotide accession

PV231354 [NCBI]

CDS location

range 73584 -> 78323
strand +

CDS

ATGACCGATTACACGCCGATCCTGAAGCTGCCTGAGGTCGCGCCCAACCAAAACCAGAAGGAAGACACGATCAACACCGCGCTCGCCATCTTGGAGAGCGCGATGAACAACGTGAAGCCCTACACCCTGACGGGTGCAGGACCTCTCGCCCTGAACGACGACGACTTCACCCGCTACTTCCTGCACCGCTTCTCGGGGCAGACCGCCGCCTACGAGATCACCGTCCCCGCCGTCCAGCCGCGCTGGTTCGCCGTGGAGAACGCCGGCTCGTTCGCCATCACCCTGCGCTGCTTTGGCGTTTCCGGTGGTCTGCCGTTCGAGGTTCCGCCCGGCAAGATCGGTCTGGTGGTCTCCGACGGCGCGGACCTGCGCACCATCGTGCCGCAGTCGGGCATGGGCCTGCTCCAGGACCTCTCCGATGTCTCGGGCGTGCCGACCGACAAGCAGGTCCTGCGCTATGACGCGGCCACGAGCCTGTGGAAGCCCTCGACCTTCCTGATCTCGTTCGGCGAACTGACCGACACCCCCAACAACTACCTCGGTGCCAACGGCAAGATCGTCGCGGTGAACGCTGCGGGCGATGGCCTGGAGTTCGTCTCCTCGGCCGCCAACGTCAACTCCTTCGTCGACCTCGACGACACGCCCAGCAGCTACTCGGGCGCTGCGGGCCTGACCGTCAAGGTCTCGTCCGGCGGTACGGGCCTGATCTTCGCCGCCCCGACCTTCCTGGAAGCCTCCGACACGCCCAACAGCTATAGCGGGCAGGCCAAGAAGTTCGCCCGCGTCAAGACCGACATGTCGGGCCTGGAGTTCGACAGCGTCCGCCTGACGGACCTGTCGGATGGGCCGGGGACCTATGCGGGCTTCGGCGGCATGTTCGTGCGCGTCAAGAACGACGGCACGGGGTTCGAATTCAACACCGGCTCGGGCGGCCCCGACAACTTCCTGGACCTGACCGACACGCCTGACGCGTACACGGGTCAGGGGAACAAGGCCGTGCGCGTCAAGACCGACGTCTCCGGCCTGGAGTTCTACACCCCGACCCTGGTGGGCCTGGGCGACACGCCGGCCAACTACACCGGCGCGGCCAACAAAATCCTGCGCGTCAACGGCTCGGGCAATGCGGTCGTCTTCAGCACCCTGGCCTTTGGGGAGCTTTCCAACGTCGCCAGCGGCGAGGCCAACAAGTGGCTGCGCTGGAACCCGGCCGGCAACGGCATCATCAACGACACCCCGACCTTCCTGGGGCTGGCCGACACCCCCAACGCCTATACGGGCAACGAGGGCAAGTTCGTTTACGTCAAGGGCGACGGCTCGGGCCTGGGCTTCTCGGCCTCGTCGGTCAACCTGTCGTATCTTGAGTTGAACGATACGAACGACACGACCTACTCGGGTAAGACCGACATGGTCCCGATCGTCACGATCGTGGGCTCCACGCCGGTCCTCCAACTGGGCTTCCACAAGTTCAGCAAGCTCTCGGGCATCAGCCTGTCCTCGCCCACCGAGGGTCAAATCCTCGGCTACGACGCCGACCTGGGCCTGTGGACCAACATCGACGCGCCCGAGGGCGGTGGGGGCGGCTCCATCGGCGTGCCCTCCTATGGGCCGCACGCGTACTGGCGCCTGCTGCTGCACACCACCGACGGCAGCACCAGCCAGTACGGCATCCAGGAAATCCAGTTCAAGCACTCCAAGACCGGCGCGGACTTGGCCAATGGCGGCACGCCCTCGGCCAGCAGCGACCAGTTCGGCACGGTCGCCGGAGCGTTCGACAACGTCATCTCCGGCGCGTGGTTCTCCAACACGCCCAACGACGGCGAGTGGATCGCCTACCACTTCACCACGCCGGCCGATGTCCGCTACGTGACCCTCCAGGGCTCGCAGTCCCAGCCGGACACCTCCCCGCGCTCGTTCTCGGTCCAGTACAGCGACGACGGCGTCGCCTACACCACCGCCTGGGAAGTCACCGGGCAGAACGGCTGGGCGCCGGGCCAGACCCGCGAATTCCACGCCCCGATCGACCTCTTCTTCACCGATCTGGCCGACGCTCCGCCCAGCTACATCGGTCAGGCGCTGAAGGTCCTGCGGGTCAACGCCGGCGAGACCGCGCTCGAACTCTTCACCCTGCCGTCCATCCCGACCAAGCTCGACGACCTGACCGACGTCCAGGTCACGGGCACCCCGACCGACGGGCAGGTGCTGGCCTGGGACGACGCGACGGGGGTCTTCAAGCCCACCTCGGTGCCGGGCATCACCCCGACCGCGTTCACCGACCTGACCGACGCGCCCACCTCCTATGCGGGCGAGGGCGGCAACGCCGTGCGCGTCAAGATGACTGAGGACGGTCTGGAATTCTACACCCCCGGCACGGGTGGTGGCGGCGGGGGTGGCAGCTATCGCGGGGCCTGGGCCTCGGGTTCCGAGCAGGTCATTCTCAACTTCGAGAACGGCAGTCTCAATCCGGCCTTCACCTATGATGCGGCCGGCTTCAACGTCGTCATCCAGCCGGACACGGTCTCGGGCACCACCCTGGCCCTGAAGTTCCGTCCGATCGGCAATGGAGCGACCTGCTATTGCGACCTGCCGGTCGAGGACGTGGTTGGGATCGCCAACTTCAAGGTCCGCTACAAGGTCTCCTCCGAAGGTCCGGACTTCTTCCGGGTCATCCAGGACGGTACGACCACGCTGCTGACCGACAGCGGCAACACCGGGCTGTACGAGGAAGGGTCTTTCCCGGTCACCGGCGACCACACCCTGCGGTTCCAGTACAGCAAGGACGGCTCGCTGGCGGTCGGCGACGACACCGTCTACATCTCGCAGATCACCTACTTCAAGACGCTGACCAACCCCTACGTCTACGGGGACACGATCACCTATGCCGGGTCCTATTGGCTCTGCCGCGTCGGTGGAACCTCCGAAGAGCCGGGCGTTGGCGACGACTGGATCAAGCTGCCTGATACCCTGGCGCAACTGGATGACGTCGACCTGACCTCGTCGCCGCCCTCGAACGGTCAAGCCCTGGTCTTTGATGGCGCGACCAACAAGTTCAAGCCGGGAACCGTGGCCGGCGGCTCGGGTGGTGGCAACAAGTACAACATCGGCGTGACGCCGCGCACGCGTCTGCACCGCGCGGCTATCCAGTCGATCCCGACTTCGACCTGGACGGCGGTCCAGTGGGACACCGAGGCCGAAGACGCCGCCAACGCCTTCACCAGCGGTGCCAACACGCGGGTCACCATTCCGGCGGGCGTCAAGGCCGCGCGCGTGACGGCCTATGCCAACTGGGTGACGCCGGTCACCACCTCGATCGTGGGCTTGGCCCTGCGTCGCAATGGCGTCGAGATCGGCTCTACCGGCGGCTCGCCCGTCGCGGCCTCGCGCGCGGGCCTCTACCAGTCGCATCTCAATTTCACGTCTGAGTGGTTCCCGGTCACGCAAGGGGACTACTACGAGTTGTTCGTCTATCACGACTCGGGCTCCAACCGGGACCTGAACGGTCCGGTCACCAACTTCGGCGAGAACACCTACCTCCAGTTCGAGTGGGATGAAGGCATCTCGCCCTCGGCGGTCGAGGCCGGAGACTTCCACGGCCCCCACCAGGGCTGGCGGATGCTGACCATCGACAGCCAGACGGGAACCTATGCCACGTTTGGGGAACTGAAGTTCTTCGACCGTAGCGGCGTCCAGATCGCCACCACCGGCGGGAAGCTCTTCGACACCTACTCCCACCCCTCTTACCCTGTCCAGCAGGCCTTCGACGGCAACAACACGACCTACTGGTCCTCGCTCCAACAGACCTCGACCGGTCAGCTTGCCGGCCCCGGCTACATCTTCGCCGCGCCCGTCGATGTCGGCTCGATCAAGCTGACCTCGACGTCGACCGACTTCAACAGCACCAACTCGCCCAAGAACTTCGCGATCCAGTACACCGATGACGGTGGCGCGTCGTGGTTCACCTACGTCACCTTCAGCAACCAGACCGGCTGGGGCGACCGGGAGGAGCGCACGTTCGTCCTGCCGACGAGCGGCATCGCCCGCGTCGGGGGCGCCCGCGCGCTCGACGAACTCAAGGACGTCACGATCGGCACGCCCAAGAACGGCGACCTGCTGACCTATGACGCGACGACCTCGACCTGGAAGCAGAAGTCCCGCTGGGGCTATGCGCCGCCCGTGGCGGCCGATTTCCCCACGGCCGTGGGCACCGTGCCCCTGACCCTGACCTATGACGACGAGGTCGGGCTGATGATCGACTGCGGGGCCAGCGCCTCAGGGGACGTGCAGCGCGCCGTCCTCAAGGCGCTGCCGACGGGGGACTGGAACCTGACGGTGAAGATCACCGACCATCTGGCGCCGGTCTACTATAACGCCGTCGGGATCATGCTGCGTGAAGCGGCGACCGGCAAGATCGTCCTGTTCGGGTGCGAGGTCGCGGGATCGAGCTTCTCCGTCCCCGTGCGGCAAGTGCGTTTCTCGCGGCTGGCGGGCCTGTCGGGCTTCACGGCCAACGACTATGCCCGCCCGTCGCCGTCGCTGCCGCAATGGTATCGCATCTCCCTGACCGGCAGCACGCTCAAGGCCGAGGTGTCGGCTGACGGCAAGTTCTGGCGCACCGTGGTGTCGCAGGCCGTGACCACCGGGTTCACGACCAAGCCCGACCAAATCGGGCTCGGCTGTTCGCTCAACTACACCGACTCCCAGTCGGCGATGTTCTCGGTCCCCTACTGGAGTCAGTCCTGGTAG

Genome Context

Tertiary structure

PDB ID

34a70d1d74a8a230853038d2698d08c1847543d1a7f1e46ac1cb5e41d30c389b

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,6775

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Dolichocephalovirinae Phages Are Present as Episomal Pseudolysogens Within a Wide Range of Soil Bacteria	Mohammadi,T. and Ely,B.	2025-05-28	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature