Protein

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Genbank accession
YP_010083301.1 [GenBank]
Protein name
BppU family baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,60
Protein sequence
MSNLEKSVNINLENTAHYENISNLDITFRTGESDSSVLLFNITKNNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTITFNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSRITDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVTSGSTSNWQKAKITKDDGKITQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVEYLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQNAQSKANTAESNAKLYTDDKFNKRYSVIFDGTANGVGSTLYLK
Physico‐chemical
properties
protein length:393 AA
molecular weight: 44215,00070 Da
isoelectric point:5,70745
aromaticity:0,08651
hydropathy:-0,56972

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
6–130
G3DSA:2.60.40.3350 Coil cd19958 Coil
IPR018913
ATT
6–152
IPR018913
DC_1216
STR
45–370
DC_1216
YP_010083301.1
1 393
Architecture
ATT
STR
ATT 6-152 | STR 153-370 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SauS_JS02
[NCBI] 		2726708 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010083301.1 [NCBI]
Genbank nucleotide accession
NC_055040 [NCBI]
CDS location
range 39031 -> 40212
strand +
CDS
ATGAGTAATTTAGAAAAATCTGTAAATATAAATTTAGAAAACACAGCGCATTATGAAAATATTTCAAATCTAGATATAACTTTTAGAACAGGAGAGAGTGATTCTTCTGTTCTTCTTTTTAATATCACTAAAAATAATCAACCGTTATTACTGAGTGAAGAAAATATCAAAGCAAGAATAGCGATTCGAGGTAAAGGAGTAATGGTAGTTGCTCCACTAGAAATATTAGATCCATTTAAAGGTATATTAAAATTTCAATTACCTAATGATGTAATTAAAAGAGATGGAAGTTATCAAGCTCAAGTTTCGGTTGCAGAATTAGGTAATTCAGACGTGGTAGTTGTAGAGAGAACTATCACATTTAACGTTGAAAAAAGTTTGTTTAGCAAGATTCCCTCTGAAACAAAACTACACTATATTGTTGAGTTTCAAGAATTAGAAAAAACTATTATGGATCGCGCGAAAGCAATGGACGAGGCTATAAAAAATGGTGAAGATTATGCGAGTCTGATTGAAAAAGCTAAAGAAAAAGGGCTATCAGATATTCAAATAGCAAAATCGTCAAGTATAGATGAATTAAAGCAACTCGCTAATAGCCGTATAACCGATTTGGAAAATAAAGCGCAAGCATATTCAAGAACATTCGATGAGCAAAAGCGATATATGGATGAGAAACATGAAGCCTTCAAGCAGTCAGTGAATAGCGGCGGTTTAGTCACAAGTGGTTCAACTTCAAATTGGCAAAAAGCTAAGATTACTAAAGACGACGGTAAAATAACACAGATTACTGGATTTGATTTTAATAATCCAGAACAAAGAATAGGAGATTCAACCCAATTTATTTACGTCTCACAAGCCATAAATTATCCAAGAGACGTAAGCACTAACGGTACTGTCGAATATTTAGTAGTAACTTCAGACTACAAACGTATGACATATCGACCAAACGGTACAAATAAAGTATTTGTTAAAAGAAAAGAAGCAGGTTCATGGTCTGAGTGGTCAGAATTAGCCATTAATGATTACAATACACCTTTTGAAACTGTTCAAAACGCCCAATCAAAAGCTAATACGGCCGAAAGCAACGCCAAACTATACACAGATGACAAGTTTAATAAAAGATATTCAGTTATTTTTGATGGAACAGCAAATGGCGTGGGCTCAACATTATATCTTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b72875368804e7c7dfb634b4159bbebb45f3824519a9805bead74fe794d4c1b4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8218
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization a novel phage infecting S. aureus Zhang,L., Hou,X., Wang,H., Wang,R., Soleimani-Delfan,A. and Shahin,K. 2024 — GenBank