Protein

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Genbank accession
WVX90593.1 [GenBank]
Protein name
baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSVEELQKVASIDLEEEAYLKPVSNRGIGFYNLDKNTAQFQFRVTKKDKPLLISDKNVKGYAFFKAQNGSETERASTSGVLDLEFIDPMRGLVGVTVPPWFLKNVTNSTVLGELYLSLNDVGLKGKDDTVVLGTFSFSVRDSLVNQIESDIKVSYIREFDEWRTEVESRFEKLKNDITNTQSLIDTVKQIATDSLAKINKAQADAISAMSDALLSSTNSIDLERDEALRQIDAKRDAVKTDYDLAADSFNKLSDDKTQTFNNNVSSANQTIDDKVNAFNQTLANGGFTTSSDVDNKLATVNWQKYKLTKEDGSRILLDGAGADITTLNTGQYQTYNYVGMPANEGDKKSYWNVDISTGADNVKQIVATLSYKNKQFIKVIHKGQDLGWKLLTNDTIDTGWLDLPLINGVIPYGSMYRPVYRLINENGLNKLYLKGAVKNIASKNVAIANLPTNITSLVTSNMPFPQIGSNKGGISTLIRWSVTVNGAIQIDGSSMDTSQMSPDDFYPINTSMLL
Physico‐chemical
properties
protein length:514 AA
molecular weight: 56844,22980 Da
isoelectric point:5,04562
aromaticity:0,08171
hydropathy:-0,36245

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
13–146
G3DSA:2.60.40.3350
IPR018913
ATT
20–166
IPR018913
DC_0196
STR
24–513
DC_0196
WVX90593.1
1 514
Architecture
ATT
STR
ATT 13-166 | STR 167-513 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage SU1
[NCBI] 		3110551 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas campestris pv. campestris
[NCBI] 		340 Bacteria > Proteobacteria > Gammaproteobacteria > Xanthomonadales > Xanthomonadaceae > Xanthomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVX90593.1 [NCBI]
Genbank nucleotide accession
OR842880 [NCBI]
CDS location
range 35330 -> 36874
strand +
CDS
ATGAGTGTAGAAGAATTACAAAAAGTAGCAAGCATTGATTTAGAAGAAGAAGCGTATTTAAAACCAGTGTCTAACAGAGGCATTGGTTTTTATAATTTAGATAAAAATACGGCTCAATTTCAATTTAGAGTAACTAAAAAAGACAAACCACTATTGATTAGTGATAAGAATGTAAAAGGTTATGCATTCTTTAAAGCACAAAACGGTTCAGAAACTGAACGAGCTAGCACATCAGGTGTTTTGGATTTAGAATTTATTGATCCAATGCGTGGGTTGGTAGGTGTCACAGTACCACCTTGGTTTTTGAAAAATGTAACAAATTCAACTGTATTGGGCGAATTATACTTATCACTCAATGACGTTGGTTTAAAAGGTAAAGACGATACAGTTGTTCTAGGCACATTCTCATTCAGTGTTCGTGATAGTCTAGTTAATCAAATTGAAAGTGATATCAAGGTATCTTATATCAGAGAATTTGACGAATGGAGAACGGAAGTTGAATCAAGATTTGAAAAACTAAAAAATGATATAACAAATACACAAAGTTTAATTGATACAGTTAAACAAATAGCTACCGATTCTCTAGCTAAAATCAATAAAGCTCAAGCCGACGCTATAAGTGCTATGTCAGACGCGTTACTTTCTTCAACTAATAGTATTGATTTAGAACGTGATGAAGCTTTAAGACAAATTGACGCTAAACGTGATGCAGTAAAAACCGATTACGATTTGGCGGCTGATTCTTTTAATAAGTTATCTGATGACAAAACACAAACATTTAACAACAACGTGTCTAGTGCAAATCAGACGATAGATGATAAAGTGAACGCGTTCAATCAAACATTAGCTAATGGCGGTTTCACAACGTCGTCAGATGTAGATAATAAATTAGCGACTGTGAATTGGCAAAAATACAAACTGACAAAAGAAGATGGTTCACGTATTCTTTTAGATGGTGCAGGCGCAGATATTACAACGTTAAATACTGGACAATACCAAACATATAATTATGTAGGCATGCCTGCAAATGAAGGTGATAAGAAATCTTACTGGAACGTTGATATTTCTACCGGTGCTGACAACGTCAAACAGATCGTCGCTACATTAAGTTATAAAAACAAGCAATTCATCAAGGTTATTCACAAGGGACAGGATTTAGGTTGGAAATTATTAACTAATGACACGATAGACACAGGTTGGCTTGATTTACCTCTGATTAACGGCGTTATTCCTTACGGTTCGATGTACAGACCGGTTTATCGCTTAATTAACGAAAATGGTTTGAATAAACTATACCTAAAAGGCGCGGTTAAAAATATCGCATCTAAAAACGTTGCGATAGCTAACTTGCCTACTAATATCACTAGTTTAGTGACTAGCAATATGCCATTTCCACAAATAGGTTCTAATAAAGGTGGCATTTCAACTTTAATTAGATGGTCTGTGACGGTGAACGGCGCTATACAAATAGATGGTTCTTCGATGGATACATCACAAATGTCACCTGATGATTTTTACCCAATAAACACAAGTATGTTGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c71343c7bf078b4bbb79e521910a8ebd1bd6de67e10327f32c75201eebded094
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7814
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50