Protein

View in Explore

Genbank accession

XYM49448.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,87

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAYSYVTHTTERSRTVFPFGFTGLGRGYIRESDVVVEVRDDNQGQWRKITAWRFETSNSINLTAGIEAPTDGQPNLRIRRVMPKDSTYANWQTGQNYSDFVINNSFLQQLYTIHEVLDGFVDSISSSITLNGNNIRDLGRAHQDTDAAQWGQVKELVQDIQTQMQQAGQDVQGIKEAMVVIEAHKLITEAAAKSAGDNAVQVQRDRQAVETISQEVNTARDRFQWAADKIAVLEQDGVLSPIAYKGRITATGLAAISNMEANDFWIITEKGSVTNHVNGQDVVVQFGYGDGAAYGRIGHNSAGAPIFGWSNVGYVMASRGPQGEQGPRGLQGIQGPQGEIGPQGEQGIAGPRGDKGDQGPVGPKGDKGDTGPTGATGEQGVKGPQGDQGIQGIQGLQGERGPKGDKGNAFVYSDFTPAQLALLKGPQGIQGIQGPKGDQGARGEQGIQGLRGEKGEKGDAFVYTDFTPAQLLGLKGPKGDTGSQGPQGTQGIQGPKGDKGDKGDKGDKGEQGIQGIQGATGAQGVQGPKGDAGQDGADGHGFTLKGEATVAQVNALSGVHLGTAYVLKDAGTITGSIAVKAQDIIVMGDANKWMNLGPVRGPQGPQGIQGTKGPQGEQGIQGAQGPKGDKGDKGETGDKGDTGDAGPQGAQGLQGERGLKGETGDTGPQGPKGDKGEKGDQGDIGPQGPQGEQGIKGIQGPQGEQGVQGPKGPKGDKGDTGDQGPKGPRGEQGETGAQGIQGPQGLRGLQGLKGDKGDTGDPGPKGPQGDRGLQGIQGLRGPQGPQGEIGPKGPQGDQGEIGPQGAKGLDGATGPRGAKGETGARGPQGLQGAKGPQGDRGPQGEQGPRGLQGSKGPQGDQGVRGSRAYNREITTQQWTIAEALKADPTPLQYDMVTLFNSLEQFSESRMFNGGSPSAESSWTVIDKTVLGKIRVLGGAVITGTLEDNVIDIAAGRDAALFLMHDGTIKAAGSARHQRGQAALGPHGGPLNVPLGPAFAVWSGRQNTPVKLMAGKAHGFILHRTGALYGWGPAGPVLRSCPADHVGFPWQIESNVKDFKLSTDVYYNEENIRVLAKLNNSAETWVMWGNADNRGGWGNGMFGNQNTSIPLTPPNNRKVTNAWSLFGSNAVTFIQTDNNYVYASGACFHGQLGVGQAVDHIERWVEVTALRGKKILDIRGWQSEPRSAYTGVWALLENGEIWYTGSDYSGQSGGAVTGGAGAQITTFVRSTPAGKHFDRIEVFTSGMTILAREKTTSYWWGTGASPQGQLGSIGATSRKGWAVVCAQPNYDVSENVHVTSANADPIIFFETKKDIEGKERAWIGRLGGNPHHSAGDISTATTATGYAHGVIKQMSNVSFPAGVRKWINTDNDGYYVSIVLLNNGEVWGAGQTLTGMLNGAKFNPMNPSAEIMFTRLF

Physico‐chemical properties

protein length:	1416 AA
molecular weight:	148221,21410 Da
isoelectric point:	6,10061
aromaticity:	0,06497
hydropathy:	-0,60501

Domains

Domains [InterPro]

DC_0245
STR
1–642

DC_0245 DC_1479 IPR008160 IPR009091 IPR009091

IPR005604
ATT
2–125

IPR005604 IPR008160 IPR008160 IPR050149 IPR009091

G3DSA:1.20.5.320
STR
380–421

G3DSA:1.20.5.320 IPR008160 IPR008160 DC_1266

DC_1284
STR
634–694

DC_1284 DC_0620 G3DSA:1.20.5.320

XYM49448.1

1 1416

Architecture

ATT

STR

ATT 1-125 | STR 126-800 | STR 808-1408 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0245	STR	DC_0245	1	642	Novel HMM	DC_0245	Central	Low	Positional only	55 proteins / 55 hits
IPR005604	ATT	DC_0240	2	125	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
IPR008160	STR	DC_0536	350	408	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	380	421	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR008160	STR	DC_0536	477	534	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR050149	Unmapped	-	601	865	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	601	656	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1284	STR	DC_1284	634	694	Novel HMM	DC_1284	Central	Low	Positional only	28 proteins / 28 hits
DC_1479	STR	DC_1479	679	739	Novel HMM	DC_1479	Central	Low	Positional only	21 proteins / 21 hits
IPR008160	STR	DC_0536	700	758	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0620	STR	DC_0620	726	800	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
IPR008160	STR	DC_0536	808	866	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1266	STR	DC_1266	809	1012	Novel HMM	DC_1266	Central	Low	Positional only	66 proteins / 66 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	838	889	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR009091	STR	IPR009091	921	1034	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR009091	STR	IPR009091	945	1171	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR009091	STR	IPR009091	1048	1408	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Vibrio phage BD5 [NCBI]	3411690	Viruses >
Host	Vibrio vulnificus [NCBI]	672	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Genbank protein accession

XYM49448.1 [NCBI]

Genbank nucleotide accession

PV244425.1 [NCBI]

CDS location

range 39776 -> 44026
strand +

CDS

ATGGCTTATTCATACGTAACTCATACGACTGAACGTAGCCGCACAGTATTCCCATTTGGATTCACGGGTCTTGGCCGAGGCTACATCCGTGAGTCCGATGTGGTAGTAGAAGTGCGAGATGACAATCAAGGTCAATGGCGTAAGATTACTGCATGGCGATTTGAGACTAGTAACTCAATCAACCTTACCGCAGGTATCGAAGCCCCGACAGATGGTCAACCTAACTTACGTATCCGTCGTGTCATGCCTAAAGATAGCACTTATGCTAACTGGCAAACAGGTCAGAACTACTCTGACTTCGTAATCAATAACTCCTTCCTACAGCAACTATATACAATACATGAAGTGTTAGATGGCTTTGTTGATAGCATCTCATCTAGCATCACATTGAATGGTAATAACATCCGAGACCTAGGCCGAGCACATCAAGACACTGATGCTGCACAGTGGGGACAGGTCAAAGAGCTTGTTCAAGATATTCAAACTCAAATGCAGCAAGCTGGCCAAGATGTGCAAGGCATCAAAGAAGCAATGGTCGTAATCGAAGCACATAAGCTAATCACTGAAGCTGCTGCCAAGTCTGCTGGTGATAACGCTGTGCAGGTACAACGTGACCGTCAGGCAGTGGAGACTATCTCCCAAGAGGTTAACACAGCACGTGACCGATTCCAGTGGGCTGCTGATAAGATTGCCGTGCTTGAACAGGATGGTGTACTAAGCCCAATCGCATACAAGGGACGAATCACAGCCACAGGGCTAGCTGCAATCTCTAACATGGAAGCAAACGACTTCTGGATTATCACTGAGAAAGGCTCGGTAACTAACCATGTTAATGGTCAAGATGTGGTAGTCCAGTTCGGTTATGGTGATGGTGCAGCCTATGGACGCATCGGACACAACTCAGCTGGAGCTCCTATATTCGGTTGGTCTAACGTTGGTTATGTTATGGCTTCCCGTGGTCCACAGGGTGAACAAGGCCCCCGTGGCTTGCAAGGTATCCAAGGACCTCAAGGTGAGATTGGCCCACAAGGTGAGCAAGGTATTGCTGGTCCACGTGGTGACAAGGGAGACCAAGGCCCTGTAGGTCCTAAAGGAGATAAGGGAGACACTGGACCCACTGGTGCGACTGGTGAGCAAGGTGTCAAAGGTCCACAAGGAGACCAAGGAATCCAAGGTATACAAGGTTTGCAAGGTGAGCGAGGGCCAAAAGGTGACAAAGGTAATGCATTCGTGTATTCCGATTTTACCCCTGCTCAACTTGCACTACTAAAAGGACCACAAGGCATCCAAGGTATCCAAGGCCCTAAAGGAGACCAAGGTGCACGAGGTGAACAAGGTATCCAAGGTCTACGAGGTGAGAAGGGTGAGAAGGGTGATGCATTCGTGTATACAGACTTCACACCTGCTCAGCTACTAGGACTTAAGGGACCTAAAGGTGATACAGGTTCACAAGGCCCACAAGGTACCCAAGGCATCCAAGGTCCGAAAGGAGACAAGGGTGACAAAGGTGACAAGGGTGATAAAGGCGAGCAGGGTATCCAAGGTATCCAAGGTGCCACAGGTGCACAGGGCGTGCAAGGTCCTAAAGGTGATGCAGGTCAAGATGGTGCAGATGGTCACGGCTTTACATTGAAAGGTGAAGCTACTGTTGCACAAGTGAATGCGCTATCTGGTGTGCATCTTGGTACAGCCTACGTCCTTAAGGATGCAGGTACAATCACTGGTTCAATTGCTGTTAAGGCACAAGACATCATCGTAATGGGTGATGCTAACAAGTGGATGAACCTAGGCCCTGTACGTGGACCACAAGGACCACAGGGCATCCAAGGTACTAAAGGCCCACAAGGTGAGCAAGGTATCCAAGGTGCTCAAGGCCCTAAAGGTGACAAGGGTGACAAAGGTGAAACCGGAGATAAGGGTGACACTGGTGATGCTGGCCCACAGGGTGCACAAGGTTTGCAAGGTGAGCGAGGCCTTAAAGGTGAAACTGGTGATACCGGACCACAAGGGCCAAAAGGCGACAAAGGTGAGAAAGGGGACCAAGGTGACATCGGACCTCAAGGACCACAAGGTGAGCAAGGCATCAAAGGTATCCAAGGCCCACAAGGTGAGCAAGGTGTACAAGGACCTAAAGGACCGAAGGGGGATAAAGGTGACACAGGCGACCAAGGACCTAAAGGACCACGGGGTGAGCAGGGTGAGACTGGTGCACAAGGCATCCAAGGGCCACAAGGTTTACGTGGACTTCAGGGATTGAAGGGTGACAAAGGGGACACGGGAGACCCAGGACCTAAAGGACCACAAGGAGACCGTGGCTTGCAAGGCATTCAAGGTCTACGTGGACCACAGGGACCACAAGGTGAGATTGGACCTAAAGGGCCACAAGGGGACCAAGGTGAAATTGGGCCTCAAGGTGCTAAAGGTCTTGATGGTGCAACAGGACCTCGTGGTGCCAAAGGTGAGACAGGCGCTCGTGGACCTCAAGGCTTACAAGGTGCCAAGGGACCACAAGGTGACAGAGGGCCGCAAGGTGAACAAGGTCCTCGTGGTTTGCAAGGTAGCAAGGGACCACAAGGGGACCAAGGTGTTCGAGGTTCACGTGCATACAACCGTGAAATCACCACTCAACAATGGACAATTGCCGAAGCCCTAAAAGCTGACCCTACACCTTTGCAATACGACATGGTAACATTGTTCAATTCACTTGAGCAGTTCTCTGAATCTCGTATGTTCAATGGTGGTAGCCCTAGTGCAGAATCAAGCTGGACCGTAATTGACAAGACAGTACTTGGTAAGATTCGCGTACTAGGTGGTGCTGTTATTACGGGGACACTAGAGGACAACGTGATTGACATTGCTGCTGGTCGTGATGCTGCATTGTTCTTGATGCACGATGGTACAATCAAAGCAGCTGGCTCAGCCAGACACCAACGAGGACAAGCAGCATTAGGCCCTCACGGTGGCCCACTTAACGTTCCGTTAGGTCCTGCTTTCGCTGTATGGTCTGGGCGTCAGAACACACCTGTTAAGCTTATGGCAGGTAAGGCTCACGGGTTCATCCTACATCGTACTGGTGCACTGTATGGTTGGGGACCTGCTGGCCCTGTACTACGTTCATGCCCTGCTGACCATGTTGGCTTCCCTTGGCAGATTGAATCTAACGTTAAAGACTTCAAGTTATCAACTGATGTATACTACAACGAAGAGAATATCCGTGTACTAGCTAAGCTTAACAACTCGGCTGAGACTTGGGTTATGTGGGGTAATGCTGATAACCGTGGTGGTTGGGGTAATGGTATGTTTGGTAATCAAAACACCTCAATTCCACTAACTCCACCTAACAACCGTAAGGTTACTAATGCATGGTCACTGTTCGGTAGTAACGCTGTTACATTCATCCAGACAGATAACAACTATGTTTATGCATCTGGTGCATGCTTCCACGGACAGCTAGGTGTAGGTCAAGCTGTTGACCATATTGAAAGATGGGTAGAAGTTACTGCACTTCGTGGCAAGAAGATTCTTGACATCCGTGGTTGGCAAAGTGAACCTCGTTCTGCATATACGGGAGTATGGGCCTTACTTGAGAATGGTGAAATCTGGTATACTGGTTCTGATTACTCAGGTCAGAGTGGTGGAGCTGTGACTGGTGGTGCTGGTGCACAAATCACTACGTTCGTTCGCTCTACTCCTGCTGGTAAGCACTTCGACAGAATTGAAGTATTCACCTCTGGTATGACTATCCTAGCTCGTGAGAAGACAACAAGTTACTGGTGGGGAACTGGCGCTAGTCCTCAAGGTCAACTTGGAAGTATTGGTGCCACCTCTCGTAAAGGATGGGCAGTTGTGTGTGCTCAACCCAATTACGATGTTAGTGAGAACGTGCATGTTACCTCTGCCAACGCTGACCCTATCATCTTCTTCGAAACTAAGAAGGACATTGAAGGTAAGGAACGTGCATGGATTGGCCGTCTTGGTGGGAACCCTCACCATAGCGCAGGGGACATTTCAACAGCTACCACCGCCACTGGTTATGCTCATGGTGTTATTAAGCAAATGTCTAATGTATCATTCCCTGCTGGTGTTCGTAAATGGATTAACACGGACAACGATGGTTACTACGTTAGTATTGTACTGCTTAACAACGGTGAAGTGTGGGGAGCTGGTCAAACCCTAACTGGTATGCTTAACGGTGCTAAGTTCAACCCTATGAACCCATCTGCCGAGATTATGTTCACACGTTTATTCTAA

Genome Context

Tertiary structure

PDB ID

75a3d3f9170b5916f23aedeec6591413f764ba1e329d939173e1b395e6cf6cca

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3615

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence