Protein

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Genbank accession
XYO02678.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MATEKPDLTRVWASGAPEGNVVDPDTQIAGKVASGWVAEAPSFRHFNFLQNWFSGGLAYFNEQGIGEWDSATVYPQHGIVKGSDGKLYKSKSANAGNDPVSDDGTFWILGLEDDGVYNGEWNPGVTYNKGATVHKNGVQYVANFSSENKDPTQDVDNFWSVKPVLSEGVSGVAHPQASNDDSLKLLFPNGIDNGFFAVTKNKSANRYCFINFGRTVEITPGSSVIAQSNRRQQEAIIANSAHVGKFDIFSKTAGVTLAGLGGGVMDDVFGISSLNTVEMAYGSTQPASEVGFKTIGSTTKDVHRIPQGDSVVYSVLHDCKLRIAATDGSSDDVGIYTSTDNINWTKRFSFNAKQAPAGQVVGYDVDIQGISNGTANYYIKVQNDTAVPADVVYVAGLNISSLDDLTTLNVDLDSAIVKRSSTEYKWCNGDGANEFAMSDTDGVFFGTYHGGHQITKEVLHTSVANYDFSVATLPAFQLTKKIDLTSISKIVCPSDTVTTAPVYDYTAKTVVGMSECHTKFQVTHKSGDVLFPDRVYASMTTASTELDNQVESISGSLNFGNVSSVTQYTDTTSAVSYREIETTASQTDVSQSTRGGAFIISGAVNRKLYFSPIQDIGSGKAFFGGQWATRKRFV
Physico‐chemical
properties
protein length:634 AA
molecular weight: 68175,54520 Da
isoelectric point:5,06273
aromaticity:0,10252
hydropathy:-0,26372

Domains

Domains [InterPro]
DC_1934
STR
1–118
DC_1934 IPR036573
G3DSA:2.10.10.90
STR
66–161
G3DSA:2.10.10.90
DC_1011
STR
107–200
DC_1011
XYO02678.1
1 634
Architecture
STR
STR 1-200 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYO02678.1
1 634
Domain Start End Length (AA) Confidence
N-terminal 1 180 180 0,9425
Central domain 181 379 200 0,1455
C-terminal 380 634 254 0,9504
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-180
Central
181-379
C-terminal
380-634

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpM-PP270
[NCBI] 		3384823 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYO02678.1 [NCBI]
Genbank nucleotide accession
PV883422 [NCBI]
CDS location
range 14189 -> 16093
strand +
CDS
ATGGCAACTGAAAAACCAGATTTAACAAGGGTATGGGCATCCGGAGCTCCAGAGGGTAACGTTGTAGATCCTGACACTCAAATTGCTGGAAAGGTGGCTTCTGGATGGGTTGCAGAAGCTCCGTCATTTAGACACTTTAACTTTCTACAAAATTGGTTCAGTGGTGGTTTGGCTTATTTTAACGAGCAGGGAATTGGCGAGTGGGACTCGGCAACTGTTTACCCTCAACACGGCATTGTTAAGGGTTCAGACGGTAAGCTTTACAAGTCAAAGTCGGCAAATGCAGGAAATGATCCAGTCTCGGATGATGGTACATTTTGGATTCTTGGCCTTGAAGATGACGGGGTTTACAATGGAGAGTGGAATCCAGGTGTGACTTACAATAAAGGGGCTACAGTACATAAAAATGGTGTTCAGTATGTAGCTAACTTTTCTAGCGAGAACAAAGACCCAACTCAAGACGTTGATAATTTTTGGTCTGTTAAGCCTGTTCTTTCTGAGGGGGTTTCTGGCGTCGCTCATCCTCAGGCGTCAAACGATGACTCGCTAAAATTGCTATTTCCGAACGGAATAGATAATGGCTTCTTTGCTGTAACAAAAAATAAATCCGCCAACAGGTATTGTTTTATTAATTTTGGAAGAACGGTGGAGATAACCCCAGGATCTAGCGTAATAGCTCAATCAAATAGACGCCAGCAAGAAGCGATAATTGCAAACTCAGCCCACGTTGGTAAGTTTGACATTTTCTCCAAAACGGCAGGAGTCACTCTGGCAGGTCTTGGCGGTGGTGTTATGGATGATGTGTTTGGAATATCATCACTAAACACTGTTGAAATGGCATACGGCAGCACCCAGCCGGCATCAGAGGTTGGGTTTAAAACGATTGGCTCAACGACTAAGGATGTGCATAGAATACCGCAGGGAGACAGCGTGGTTTACTCTGTTCTTCATGACTGCAAGTTAAGGATCGCGGCCACTGACGGAAGTTCTGATGATGTTGGTATTTACACCTCAACCGACAACATAAACTGGACAAAAAGATTTTCCTTTAACGCGAAACAAGCTCCTGCTGGTCAAGTTGTTGGTTATGATGTTGATATACAGGGCATCTCAAACGGCACAGCTAACTATTATATCAAGGTTCAAAATGACACGGCAGTTCCTGCTGATGTTGTTTATGTTGCTGGTCTCAATATCTCATCTCTTGACGATCTAACTACGCTAAACGTAGACCTTGATTCAGCAATAGTTAAGAGAAGCTCCACGGAATACAAATGGTGTAACGGGGACGGAGCGAACGAATTCGCGATGTCAGACACAGACGGGGTGTTTTTTGGTACATATCACGGCGGACACCAGATAACAAAAGAGGTGCTTCATACATCTGTCGCCAACTATGATTTTTCAGTGGCGACGCTACCGGCTTTTCAGTTAACAAAGAAAATTGATTTAACAAGCATATCGAAGATTGTATGTCCATCTGATACCGTTACAACGGCGCCAGTATACGACTACACTGCAAAGACTGTTGTGGGCATGAGTGAGTGCCACACCAAGTTTCAGGTAACTCATAAATCTGGAGATGTGCTATTCCCTGATAGGGTTTACGCATCGATGACGACAGCATCAACCGAGTTAGATAATCAGGTTGAATCAATTAGCGGATCTCTTAACTTCGGAAATGTATCGTCGGTCACTCAGTACACGGACACAACCAGCGCGGTTAGTTACAGAGAGATAGAGACTACAGCATCACAGACTGACGTGTCACAAAGCACAAGGGGCGGCGCATTTATAATATCTGGAGCTGTAAACAGAAAGCTTTACTTCTCCCCCATTCAGGATATTGGGAGCGGAAAGGCATTTTTTGGAGGTCAGTGGGCCACTAGAAAACGATTTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
57712b60f742df93bceec98a57441766c55495a3acc69a6d2f81a602ef5a41d6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4877
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50