Protein

View in Explore
Genbank accession
XIJ72043.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MVAVSLXXSAADALASKNAAAASQTAAKTSETNAKASETNAKASEINAKASEAAAAASAASIIIYEPVPYPDVWVPLTDDMRLLSGMAPYDLATINDVTLELPTKSANFTRSTTASYIDKSGKMCFADINEPRFEKQGLLMESQCTNLYTNSEEITGSSTVITTPNASACPTGEMLMTKFTENTNDSEHYSKDKFISLTADTFYCYSAYVKDDTANRLVYLRVASGTTAGMFFDIKNETVTTSGSASNIRGGYERLTGGIYRIWLSFAATTSKDTIFRLQMAKTTGVTVYPGDGVSGFYIWGIQVEEGIAPTSYIRNSTDTTTTRTADEWWCIPDNAGYRTLADYFERTVSFEFNCKVRPYTSYVEVMQVRGSRNDIICRCNSSDSATIITYRSSGGPTLSIPDIESLPPMTYVQKIVGDEISNYFNGKTAKSTSTPVSLTGTPSRLGTPPPYTVSKFVYHIKNFRVWYRALNNDQINGLR
Physico‐chemical
properties
protein length:481 AA
molecular weight: 52331,00010 Da
isoelectric point:5,40734
aromaticity:0,10021
hydropathy:-0,27641

Domains

Domains [InterPro]
DC_1979
STR
4–481
DC_1979
NF048003
Unmapped
140–327
NF048003
XIJ72043.1
1 481
Architecture
STR
STR 4-481
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XIJ72043.1
1 481
Domain Start End Length (AA) Confidence
N-terminal 1 307 307 0,2319
Central domain 308 470 164 0,2083
C-terminal 471 481 10 0,9956
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-307
Central
308-470
C-terminal
471-481

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HMD-P3
[NCBI] 		3374743 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XIJ72043.1 [NCBI]
Genbank nucleotide accession
PQ462667.1 [NCBI]
CDS location
range 79965 -> 81410
strand -
CDS
GTGGTCGCCGTATCATTAAANNGAAGTGCCGCTGATGCATTAGCAAGTAAAAATGCAGCAGCAGCTTCACAAACAGCAGCAAAAACTTCTGAGACTAATGCTAAAGCTTCAGAGACTAATGCTAAAGCTTCTGAAATTAATGCTAAAGCTTCTGAAGCCGCTGCTGCTGCCTCTGCTGCTAGTATTATTATATATGAACCTGTCCCCTATCCGGATGTTTGGGTACCTTTAACTGATGATATGAGATTATTATCTGGTATGGCCCCTTACGATTTAGCAACAATTAATGATGTAACTCTGGAATTACCAACAAAATCTGCAAATTTTACTCGCTCAACTACCGCCAGTTATATAGATAAAAGTGGTAAAATGTGTTTTGCAGATATTAATGAACCTAGATTTGAAAAGCAAGGTTTATTAATGGAGTCCCAGTGCACTAATTTATATACTAATTCAGAAGAAATTACTGGAAGTAGTACAGTTATTACAACTCCTAATGCTTCGGCTTGTCCGACTGGCGAAATGTTAATGACTAAGTTTACCGAGAATACCAATGACAGCGAGCATTATTCCAAAGATAAATTTATATCTTTGACTGCTGATACTTTTTATTGCTATTCTGCTTATGTTAAAGATGATACTGCAAATCGTTTAGTATACCTACGTGTAGCTTCCGGTACAACAGCGGGCATGTTTTTTGATATTAAAAATGAAACTGTTACTACAAGTGGTTCTGCTAGTAATATTAGAGGGGGATATGAGAGACTAACTGGAGGTATATATAGAATTTGGCTTTCTTTTGCTGCCACTACAAGTAAAGATACTATATTTAGACTCCAGATGGCTAAAACTACTGGTGTTACCGTCTATCCGGGGGATGGTGTTTCTGGTTTCTACATCTGGGGTATACAGGTTGAGGAAGGCATAGCTCCAACTTCTTACATCCGTAATAGCACTGATACCACTACTACTAGAACAGCAGATGAATGGTGGTGTATACCAGATAATGCCGGCTATAGAACCCTAGCGGACTACTTTGAGCGTACAGTATCTTTTGAATTTAATTGTAAAGTACGGCCTTATACTAGTTATGTAGAAGTTATGCAAGTAAGAGGCTCTAGGAATGACATTATCTGCCGCTGTAATAGCAGTGATAGTGCCACTATAATAACATATAGATCTAGTGGTGGGCCAACCTTATCTATTCCAGATATAGAAAGTTTACCTCCTATGACCTATGTCCAAAAAATAGTTGGAGATGAAATAAGCAACTATTTTAATGGTAAAACTGCTAAATCTACTAGTACTCCCGTGAGTTTGACAGGTACTCCGTCTAGGTTAGGTACACCACCACCTTATACCGTTTCTAAATTTGTATATCATATTAAGAATTTCCGAGTATGGTATAGGGCCTTAAATAATGATCAGATTAATGGCTTACGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8eaa9f00148d349db5c13981fa599860efd3562427cc7988aa49416d7f19ccff
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9069
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50