Protein

View in Explore
Genbank accession
ATW62315.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MIVIYPNRLNNRGMETHAVTARQSLLAWLLCNGIDQATPVDSLPMSLYLNGEQVLPGMWWNTHFGPDDEVEIYREPKGTDPFSITFALIFGAKAVLSALMPKLPNMPGSSSGSGKALGEASAKGNKVKLNDVIPELFGYNPQRYLDYLNLPRRYFAGPKEQRIEMMLGVGMGYYQIQPSSVKVGETSLLSLGDGASFTIYQPGDYVGADPAHYCWYTAPEVGASSTGAAGLELTATTDLTLATTATVFNFEGDTVVLPAGSGTFPDDWEPGLVINVVAPYTYTVTDGTGDGGRDVIGGPIAQHGFVVGDTITIMGDNEGTYTVHALTSTTMQLDYAGGAPGTGLKVGTVVMAMAFSQLRFRIVTIDSSAMVVERLLNDGTADGAWPGWDPLSSNQGQVRLDSSNLEAGYRGPYPAAPAGELVDAIEWDVFYPQGLFGLGREGQFYTIPGQHVFEWRDADRGGGDPWHEVLQIVSDDSQDQQGYTFRIVLPYQMRPECRIRKIATTQGRPEEVHDTVQWYGLRGRILASSLESFPGMTVMSCNIQGGDQISSQSEALVNLSCIRMLPTLRGGVWLPMSATREISAAIGHVVRSVGYSDTKDLNIGELERLESTYWTPRGEWYDKTVTTASTVKDILKEIAQAGMADITVSRGQITPIREGVRGSAFSAMYTPQLMLDPLDITIAMPDQPDDFDGVDVKYYDHRTRQTETVKCRMLLPSGQREAGKRVETIEIEGVGDRTRAWRIGMRRRRSQVYQIEQYEFQTELSALNSELKDYVSLGTTTPGQGQSTYMEGYYNYGGASMIETSAPLDWSKPGVYKVAVRRKDGSVSGPHTATRVDDYVLSIPTPLDFEPDFGGEWMFPVLQFGLADNWCLPAIIEDVSPKGTRSCSVKAVNYDARVYDDDNNFPPAGA
Physico‐chemical
properties
protein length:910 AA
molecular weight: 99609,92710 Da
isoelectric point:4,76717
aromaticity:0,09451
hydropathy:-0,26956

Domains

Domains [InterPro]
DC_0118
STR
1–744
DC_0118 DC_0808
NF040662
Unmapped
419–900
NF040662
ATW62315.1
1 910
Architecture
STR
RBD
STR 1-744 | RBD 775-909 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATW62315.1
1 910
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,9308
Central domain 208 406 200 0,6210
C-terminal 407 910 503 0,2397
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-910

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Psp6
[NCBI] 		2053693 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATW62315.1 [NCBI]
Genbank nucleotide accession
MG251388.1 [NCBI]
CDS location
range 39247 -> 41979
strand +
CDS
ATGATCGTCATTTACCCGAACCGGTTGAACAACCGGGGCATGGAAACCCACGCTGTCACGGCGCGTCAATCTTTGCTGGCCTGGCTGCTTTGCAACGGCATTGACCAAGCCACGCCGGTCGACTCGCTGCCTATGAGCCTGTACCTGAATGGTGAGCAGGTGCTGCCTGGCATGTGGTGGAACACCCATTTTGGCCCAGACGATGAGGTCGAAATCTACCGCGAGCCGAAGGGTACCGACCCGTTCTCTATCACCTTTGCACTGATCTTCGGGGCCAAGGCCGTACTGTCTGCCCTGATGCCCAAGCTGCCGAACATGCCTGGCAGTAGCTCTGGTAGCGGCAAGGCGTTGGGTGAAGCGTCGGCCAAGGGTAACAAGGTCAAGTTAAACGATGTGATTCCAGAGCTGTTCGGCTACAACCCCCAACGCTACCTGGACTATTTGAACTTGCCGCGCCGCTACTTCGCAGGTCCAAAAGAACAGCGTATCGAAATGATGCTGGGCGTGGGCATGGGCTATTACCAGATCCAACCATCATCGGTGAAGGTTGGGGAAACTTCCCTGCTTTCGCTGGGTGACGGCGCGTCGTTCACGATCTACCAGCCGGGGGATTACGTGGGCGCTGACCCTGCGCATTACTGCTGGTACACCGCGCCCGAGGTGGGGGCCAGTTCTACCGGCGCGGCAGGCCTGGAGCTGACAGCCACAACTGATTTGACCCTTGCGACAACGGCAACGGTGTTTAACTTTGAGGGTGACACGGTGGTGCTGCCTGCGGGGTCTGGTACGTTCCCAGACGACTGGGAGCCGGGCTTAGTCATCAACGTGGTGGCACCCTACACGTACACTGTCACTGACGGCACAGGGGATGGCGGACGCGATGTCATCGGCGGTCCTATCGCACAGCACGGGTTTGTCGTTGGCGACACGATCACCATTATGGGCGACAACGAAGGTACCTATACGGTGCATGCCTTGACATCAACCACCATGCAGCTGGACTACGCGGGCGGCGCGCCTGGTACTGGCCTTAAGGTCGGCACCGTGGTCATGGCCATGGCCTTCAGTCAACTGCGGTTCCGCATCGTCACCATCGACTCTTCAGCCATGGTAGTTGAACGACTGCTGAATGACGGTACCGCCGATGGCGCATGGCCTGGGTGGGATCCCCTGTCTAGCAACCAAGGCCAAGTACGCCTGGACAGCTCCAACTTGGAGGCCGGCTACCGAGGGCCATACCCTGCGGCACCCGCTGGGGAGCTGGTCGACGCTATCGAATGGGATGTCTTCTACCCCCAAGGGCTGTTCGGCCTTGGGCGCGAAGGGCAGTTTTACACCATCCCAGGGCAGCACGTATTTGAATGGCGCGACGCTGACCGGGGCGGCGGTGATCCTTGGCACGAAGTGTTGCAGATCGTTAGCGACGACAGCCAAGACCAGCAGGGTTACACGTTCCGTATCGTCCTGCCGTATCAAATGCGCCCAGAATGCCGTATCCGCAAGATTGCCACGACGCAGGGGCGACCCGAGGAAGTACACGATACTGTGCAGTGGTACGGCCTGCGCGGGCGCATCCTGGCGTCGTCGCTTGAAAGCTTCCCAGGTATGACCGTGATGTCTTGCAACATCCAGGGCGGCGACCAGATTTCGTCGCAGTCTGAAGCGCTGGTGAACCTGTCGTGTATCCGCATGCTGCCGACTCTACGCGGCGGCGTGTGGCTACCTATGAGTGCGACCCGCGAGATATCCGCAGCGATTGGCCATGTGGTGCGCAGCGTTGGCTATTCGGACACCAAAGACTTGAACATTGGGGAACTTGAGCGTCTGGAGTCGACGTACTGGACGCCTCGGGGCGAGTGGTACGACAAGACGGTCACCACTGCCAGCACGGTGAAAGACATCCTCAAAGAGATTGCCCAGGCCGGCATGGCCGATATCACCGTGTCGCGTGGGCAGATCACCCCAATTCGCGAAGGCGTGCGCGGTAGCGCGTTCTCTGCGATGTACACCCCGCAACTCATGCTTGACCCGCTAGATATTACAATCGCAATGCCCGATCAGCCGGATGACTTCGACGGGGTGGATGTCAAGTACTACGACCACCGCACCCGGCAAACCGAAACGGTGAAATGCCGCATGCTGCTACCGAGCGGGCAACGCGAAGCGGGCAAGCGTGTCGAAACTATTGAGATTGAGGGTGTTGGGGATCGTACCCGCGCCTGGCGGATCGGCATGCGTAGACGTCGCTCGCAGGTGTATCAGATCGAACAGTACGAATTCCAGACCGAGCTGTCGGCGCTCAACAGCGAACTGAAAGACTATGTGTCACTTGGAACAACTACGCCTGGTCAAGGGCAGTCGACGTACATGGAGGGTTACTACAACTACGGCGGCGCGTCCATGATTGAGACGTCTGCACCCCTGGACTGGTCAAAGCCGGGAGTGTACAAGGTCGCAGTGCGTCGCAAAGACGGTTCGGTGTCAGGGCCTCATACGGCTACCCGTGTTGACGACTATGTGTTGAGCATCCCGACCCCATTAGACTTTGAACCTGATTTCGGCGGCGAATGGATGTTCCCTGTGCTGCAATTCGGGCTGGCCGACAACTGGTGTCTGCCAGCTATCATTGAGGATGTGTCGCCCAAGGGCACCCGTAGTTGCAGTGTAAAGGCTGTCAACTATGACGCACGCGTGTATGATGACGACAACAATTTTCCGCCTGCTGGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e6a769abfa4dbeaba6ad2ee69428dcbae4f19c79429191bcef2542604488c6c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8281
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparationPatent: RU 2016150928 23-DEC-2016;Gabrichevsky Moscow Research Institute for Epidemiology and Microbiology Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank