Protein

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Genbank accession
AGH26130.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,73
Protein sequence
MASNILIKRSTGSTAPGSITFGELAITTGANGNQANAGDRLFVGDNNGAAQIVGGRYFMDMLDHVHGTLTADSAAIVDSNSKIDNWLVDDVQINSNFITTSTTDTDLIFRANGTGKLVIEDGQELEFGTTGDVEFSYNDSDAVLDVKRVTGTPDLRIADDMKLIFGTDKNSSIVYDETTNDKLLIDGADIKIGTTSTAKVNFANTYDANNVADAAVTIAGGLGVAATAHIKDLNVDDNTTIGTTNGDSLTVNSTTTFQNGVTFNGTTTLSGNTSQTGKIEIDNLKLDGNTLSTINSVQELILDPDPATDAGGLVIIKGDLQIDGTTTTVNSASMSVNDPTIELGDPTTPVTLTAEATGGQAVVVVDAIDQLQVGDSVTSSAAGIPNSTVINSINTGTKAVTLSNNLSQTMAVGAVLVTVSGADDALDRGVKVHYNASGTNQFGFFGYDRTGGQDGAGAWTFIENATDTNTVFGVTGDRGTVVLGDLELDTDLEVQFGGTGVSTFTTNGILYGNAAGAVQVTAEANMSTPGAGADVSTSFQVLTVTAAGVPVWTDTIDGGTF
Physico‐chemical
properties
protein length:561 AA
molecular weight: 57581,34880 Da
isoelectric point:4,05003
aromaticity:0,05348
hydropathy:-0,03583

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-213
[NCBI] 		889956 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26130.1 [NCBI]
Genbank nucleotide accession
HQ634174 [NCBI]
CDS location
range 42778 -> 44463
strand -
CDS
ATGGCATCCAATATTCTAATTAAAAGGAGTACTGGCTCAACCGCACCTGGTAGTATTACATTTGGTGAACTCGCCATTACTACTGGAGCAAACGGTAATCAAGCAAACGCAGGAGATAGACTATTTGTTGGAGACAACAATGGTGCTGCACAGATTGTAGGTGGTAGATATTTTATGGACATGTTAGACCATGTTCATGGGACACTTACAGCAGATTCAGCTGCAATTGTCGATAGTAATTCAAAAATTGACAACTGGTTAGTCGATGATGTTCAGATCAACAGTAACTTCATCACAACTAGCACAACTGATACTGACCTTATTTTCCGTGCAAATGGCACAGGTAAGTTGGTAATCGAAGATGGTCAGGAACTAGAGTTTGGAACTACAGGAGATGTAGAATTCTCATACAATGACTCAGATGCAGTTTTAGATGTCAAGCGAGTAACAGGAACCCCCGACTTGCGTATCGCTGACGATATGAAACTAATCTTTGGAACAGATAAGAATTCTTCCATTGTATATGATGAAACAACAAACGATAAACTGCTTATAGATGGTGCAGACATCAAAATTGGAACCACATCTACTGCAAAGGTAAATTTTGCAAACACTTATGATGCCAACAACGTTGCTGATGCTGCTGTAACTATAGCAGGTGGTCTTGGTGTTGCTGCGACAGCACACATCAAAGACTTGAATGTAGATGACAACACTACTATTGGAACAACAAATGGAGATTCTTTAACAGTTAACTCCACAACCACTTTCCAAAATGGTGTAACGTTCAACGGAACCACAACATTGTCAGGTAATACATCTCAGACTGGTAAGATTGAAATTGACAACCTTAAGTTAGATGGTAACACACTATCTACTATCAACTCTGTTCAAGAATTGATACTTGACCCTGATCCTGCAACTGATGCGGGTGGTCTTGTCATCATTAAAGGTGACCTTCAGATTGATGGAACTACAACTACAGTGAACTCTGCTTCAATGTCAGTTAATGATCCTACAATCGAATTAGGAGATCCAACAACTCCTGTTACACTGACTGCAGAAGCAACTGGTGGTCAGGCAGTGGTAGTTGTAGATGCTATAGATCAACTACAAGTTGGTGATTCAGTTACTTCATCAGCAGCTGGTATCCCTAACAGCACAGTTATTAACTCTATTAACACTGGAACTAAGGCAGTTACTTTGAGTAATAACCTTTCACAAACAATGGCAGTTGGTGCTGTTCTTGTTACAGTAAGTGGTGCTGACGATGCATTAGATCGTGGTGTTAAGGTTCATTATAACGCATCTGGAACTAATCAGTTTGGTTTCTTCGGTTATGACCGCACAGGTGGTCAAGATGGAGCTGGTGCATGGACATTTATTGAAAATGCAACAGATACTAATACTGTATTCGGTGTCACAGGTGACCGTGGTACAGTTGTATTGGGTGATTTAGAACTCGATACAGACCTTGAGGTTCAGTTTGGTGGAACTGGCGTTAGCACATTCACAACAAATGGTATCCTTTATGGTAATGCTGCAGGAGCAGTTCAAGTAACTGCAGAAGCAAACATGTCAACACCTGGTGCAGGAGCTGATGTATCAACATCATTCCAAGTCCTAACCGTAACCGCAGCGGGTGTGCCTGTATGGACTGACACAATCGACGGTGGTACTTTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2439d7a9b349b75b6858b4602a9894000dafd4f5dfb1cc02861629e47b6bfce9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7075
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-213 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank