Protein

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Genbank accession
YP_009799537.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
Protein sequence
MAVEFNRILETDTFLKYTEELNKIGEELSKSGNIFTQVNDLKSSLGTSQRYKLTTDTGLALNKTIRYLSDLTQAGTYYVTASVLATLPDKPKSLITSDSIVEIKPTRRVDEVIQQITTLGRDLEDGKVVYRFISSEGNSEWVYFNALSNNRYFSKSLDLSNTTEPGTYFLTNNSTGLPEEIKNAEGIVKIFVDNNNNRYYEYYNNELGIFYTGYKTSSQSSIDWKTNKTDASEIKNFLIGDMSVTDTGIEYPTFGLLTYTSDNKDWETAVKEKLATGKTMFTFYCQGGVDKSPAGKFSSRGMVISDVPGGSYGVYYAITNGGKLFTGAISNYTFTTPNVTPNGNILWQGALNFKTVDKTQKMRDTINNYDYVEIYTKMRTYKEAKGKDLIQNIAHKFYRDGETYFVCTGSLLGGEFDGSTAPSQDVYRVSLEFKGDTFQLKDSAINNSKTQYVTRIIGYNMLDAF
Physico‐chemical
properties
protein length:465 AA
molecular weight: 52265,77090 Da
isoelectric point:5,36000
aromaticity:0,12473
hydropathy:-0,47548

Domains

Domains [InterPro]
DC_1773
STR
7–260
DC_1773 IPR057110
DC_0448
STR
196–461
DC_0448
YP_009799537.1
1 465
Architecture
STR
STR 7-462 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799537.1
1 465
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,8903
Central domain 231 429 200 0,0339
C-terminal 430 465 35 0,9978
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-465

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiSA_BS1
[NCBI] 		2126734 Uroviricota > Caudoviricetes > Herelleviridae > Baoshanvirus > Baoshanvirus BS1
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799537.1 [NCBI]
Genbank nucleotide accession
NC_047945.1 [NCBI]
CDS location
range 38366 -> 39763
strand +
CDS
ATGGCTGTAGAATTTAACAGAATACTTGAAACTGATACCTTCCTTAAATACACAGAAGAGCTTAATAAAATAGGTGAAGAGTTATCTAAGTCAGGTAACATATTCACCCAAGTTAATGATTTAAAATCATCTTTAGGAACCTCACAAAGATATAAATTAACAACCGATACAGGATTAGCTTTAAACAAGACAATAAGGTACTTATCAGACTTAACTCAAGCAGGTACTTACTATGTAACAGCTTCTGTACTAGCGACATTACCAGACAAACCTAAATCTCTAATTACAAGTGATTCTATCGTAGAAATAAAACCTACAAGAAGAGTAGATGAAGTTATTCAACAAATCACAACATTAGGTAGAGACTTAGAAGATGGTAAAGTTGTTTATAGGTTTATCTCATCAGAAGGTAACTCAGAATGGGTTTACTTTAATGCGTTATCTAATAACAGATACTTTAGTAAGAGTTTAGATTTATCAAATACAACTGAACCTGGAACTTATTTCTTAACAAATAATAGTACTGGGCTACCTGAAGAGATTAAAAATGCTGAAGGTATTGTTAAAATATTTGTAGATAATAATAATAACAGATATTATGAATATTATAATAATGAATTAGGAATATTTTATACAGGGTATAAAACTTCGTCTCAGTCATCAATAGATTGGAAGACGAATAAAACAGATGCAAGTGAAATAAAAAATTTCTTGATAGGAGATATGAGTGTTACAGATACAGGTATAGAATATCCTACTTTCGGGTTGCTTACGTACACATCAGATAATAAAGATTGGGAGACAGCAGTAAAAGAAAAACTAGCTACAGGTAAGACAATGTTTACCTTTTATTGTCAAGGTGGTGTAGATAAATCACCCGCTGGTAAGTTTAGTAGTCGAGGAATGGTAATTTCTGATGTACCAGGAGGTAGTTATGGTGTTTACTATGCAATTACTAATGGTGGTAAACTATTTACAGGAGCTATAAGTAATTATACTTTTACTACCCCAAACGTTACGCCAAATGGAAATATCTTATGGCAAGGTGCTTTAAACTTTAAAACTGTTGATAAAACTCAAAAAATGAGAGATACAATTAATAACTATGATTATGTTGAAATATATACTAAAATGAGAACATATAAAGAAGCTAAAGGAAAAGACCTTATTCAAAATATAGCACATAAATTCTATAGAGATGGGGAAACTTATTTTGTATGTACAGGCTCTTTACTAGGTGGAGAGTTTGATGGATCTACTGCCCCTTCTCAAGATGTATATAGGGTAAGTTTAGAGTTTAAAGGAGATACTTTCCAACTTAAAGATTCTGCAATCAATAATAGTAAAACTCAATATGTAACAAGGATTATTGGTTACAACATGTTAGATGCCTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cfd51ecef0e2c9ff0a2bcd5fac2f57c404f3c590c9e5d24d5dd2ab914bc54245
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7549
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, the biological characteristics and genomics of two new strains of lysate Staphylococcus aureus phage Jin,X. and Zhang,C. 2021-10 — GenBank