Protein

View in Explore
Genbank accession
WDY79072.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVNDTAEITDAANGMVEYTLGGTQTARQGKHRLEFVAEFAGGETFSYPQTGFVSLKVTDPAARELPIEELADGDASVTELAADAIRANTASAVDVMDALDLNNNPITSLPVPSNPADAARKDGLDTVASDLSSVESDLTSQVTRFDELAIDRGPISSRPTSGDYDDQMYYAVDQRILWRWDAGSSDWNAAGGLGVSSQRLPVTSYLDAVDVSTLAAGDVNLSGTLTGLLLGDAADVAGNPLQNVDTVTASGTAISVDSPVAGQSPQTETHLTTKGYVDSVAQGLDWRESVLERRNDPPATPSDGDRYLVDDAPTGDWSANADEIAEWGADAAAWVFYDPNEGWAVFVESLNVLETFVDGAWIDFGSAIDHGALNGTGDDDHLQYLHVDGRRSLTGSLDADDNDLENVGAVSETENVVADAGASYDIDLSDGGVHKITLTQDCDITLSGIDAAASNSATLIVEQDGTGGHSLTWSTAVLWPRGNPPSVSDGAGQIDRLAFTHIDGDWLGSEAGAGFA
Physico‐chemical
properties
protein length:516 AA
molecular weight: 54063,78620 Da
isoelectric point:4,05003
aromaticity:0,06589
hydropathy:-0,24516

Domains

Domains [InterPro]
DC_0931
RBD
1–516
DC_0931
IPR021251
STR
293–361
IPR021251
WDY79072.1
1 516
Architecture
RBD
STR
RBD
RBD 1-292 | STR 293-361 | RBD 362-516
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum tailed virus
[NCBI] 		2992037 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum lacusprofundi
[NCBI] 		2247 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDY79072.1 [NCBI]
Genbank nucleotide accession
OP630574 [NCBI]
CDS location
range 22308 -> 23858
strand +
CDS
GTGGTCAACGACACGGCCGAAATCACCGACGCCGCAAACGGGATGGTTGAGTACACGCTGGGCGGCACGCAAACCGCGCGCCAAGGAAAACATCGCCTTGAGTTCGTCGCGGAGTTCGCCGGCGGGGAGACCTTCAGCTACCCCCAGACAGGCTTTGTCTCGCTGAAGGTGACCGACCCCGCGGCCCGCGAGTTGCCGATCGAGGAGTTGGCCGATGGCGACGCCAGCGTGACGGAGTTGGCCGCCGACGCGATCCGAGCCAACACCGCCTCGGCGGTGGATGTCATGGACGCGCTCGATCTCAACAACAACCCGATCACCAGCCTGCCGGTTCCCTCCAACCCCGCCGACGCCGCGCGAAAAGACGGTCTCGACACAGTTGCGTCTGATCTATCGTCGGTCGAATCTGACCTAACATCACAAGTAACCCGCTTCGACGAACTGGCGATTGATCGCGGCCCGATCTCGTCGCGGCCGACCAGCGGGGACTACGACGACCAGATGTACTACGCGGTGGATCAACGCATCCTGTGGCGGTGGGATGCGGGATCATCCGACTGGAACGCCGCGGGCGGCCTCGGTGTGTCGTCGCAGCGCCTACCGGTAACGTCCTACCTCGACGCCGTCGACGTCAGCACACTGGCGGCGGGGGACGTCAACCTGTCCGGCACGCTGACGGGGCTCCTCCTCGGGGATGCAGCCGACGTCGCCGGCAACCCACTACAGAACGTCGATACGGTCACCGCCTCGGGGACCGCGATCTCGGTCGACTCACCCGTCGCCGGCCAGAGCCCCCAGACTGAGACGCACCTCACGACCAAGGGGTATGTCGACAGCGTCGCCCAGGGCCTCGACTGGCGGGAGAGCGTCCTCGAACGACGCAACGACCCACCGGCCACGCCAAGCGACGGAGATCGTTATCTCGTTGACGACGCGCCGACTGGCGACTGGTCGGCCAACGCGGATGAGATCGCGGAGTGGGGTGCCGACGCCGCAGCGTGGGTGTTCTATGACCCTAACGAGGGGTGGGCGGTGTTCGTCGAGAGCCTCAACGTCCTGGAGACGTTCGTCGACGGTGCTTGGATCGACTTTGGCTCCGCCATCGATCACGGCGCACTCAACGGGACGGGAGACGACGACCACCTGCAGTACCTCCACGTCGACGGCCGGCGGTCGCTGACAGGATCCCTCGATGCCGACGACAACGATCTCGAAAACGTTGGGGCTGTCTCGGAGACCGAGAACGTGGTCGCCGACGCGGGAGCATCGTACGATATCGATCTCTCGGATGGCGGCGTGCACAAGATCACACTGACGCAAGACTGCGACATCACACTCTCAGGCATCGACGCAGCGGCCTCGAACTCGGCGACGCTGATCGTTGAGCAGGACGGGACGGGCGGCCACTCGCTGACGTGGTCGACGGCCGTGCTGTGGCCTCGTGGCAACCCGCCGAGTGTCTCCGACGGAGCTGGGCAGATCGACCGTCTCGCGTTCACGCACATTGATGGCGACTGGCTCGGGAGTGAGGCAGGGGCAGGGTTCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba3fa01fe1640afb54d173dae5e4809e15951d6ba5850c9730c5495ba9052d89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7529
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In depth characterization of an archaeal virus-host system reveals numerous virus exclusion mechanisms Mercier,C., Thies,D., Zhong,L., Raftery,M.J., Cavicchioli,R. and Erdmann,S. 2022 — GenBank