Protein

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Genbank accession
AWD90664.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGRVQAGMGRPIQGMSQQADRDRINGQCTLQENMIPSVLDSLYKRIGTRHIAELPLSADKPYDARTTIHFYDRGDEEKYFIFIEPDHATPYVFRVDGLACPVSAPQSTWDYMTDSDPLKNISFSTIGDYTFLANGSVTVRARTDVLPPNPTNKAIVYCQFATYRRTYTVVINGNTDGTGGLRYSLTMPGSTYSGNEAAANAAAQRISTDDVCQRLAYMMREGIATGDWGTTPQNAAPTYGGVVYTEKMNVEVYSNCLFVTHPSAAINTITTIDGANGGDLIAVQGRVKSPAYLPPYAPVGWTILIQNTEGVKKNNYWLRATGTDGSKVKWEESLEGGARLGFDARTMPHQLYRDQIVGGVPQFVLQAGPWDDRAVGNDTTVPFPSFLDATVESVGTFQNRLFFTSGESAIFTRSNDFYNFFKESSQTETDADPIDAFSDSEKVNLIKNSVTVDGDAIFFASNGQFMVDGSKPVTHANVVFKQVTSFPMNIFAKPAITGESIMFAYDAGNWSGIREMFTDSDKDTKSARPITEHVEKLIKGQVRQLSSNPNTNTLIVRTDTDAHIAYVYDWLWQGADKVQAAWHKWTFDTGSKLLHVQFVDDDVYFIFLHADGKVYLEHMPLTNDDNDEGMTFPCRLDRKITISATYNSTTQKWGFTVPFVIRDADLSNWLAIMGTGCYNDDIGTEFEFDRSLGQTTFVTDISLQDPTVATEVKIVMGRKFVSRYIPTQPFLRDQQGLVMSIDRMTMGRMTVNYDRTGAFKVLVSDPMGRQWQYPFYGRYMGSFNNKIGFAPLISGTFPFPVRLFTHDATIEIQSDSHLPLQIRGLEWEGSYQQTGRRL
Physico‐chemical
properties
protein length:838 AA
molecular weight: 93618,03300 Da
isoelectric point:5,28741
aromaticity:0,11456
hydropathy:-0,33568

Domains

Domains [InterPro]
IPR058003
TTP
1–837
IPR058003
AWD90664.1
1 838
Architecture
TTP
TTP 1-837 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWD90664.1
1 838
Domain Start End Length (AA) Confidence
N-terminal 1 135 135 0,9769
Central domain 136 334 200 0,4332
C-terminal 335 838 503 0,3085
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-135
Central
136-334
C-terminal
335-838

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Nerthus
[NCBI] 		2163984 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Nerthusvirus
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90664.1 [NCBI]
Genbank nucleotide accession
MH113813 [NCBI]
CDS location
range 26514 -> 29030
strand +
CDS
ATGGGCCGAGTTCAAGCTGGCATGGGGCGACCCATCCAAGGCATGAGCCAGCAGGCTGACCGCGACCGCATCAACGGGCAATGCACTCTGCAAGAGAACATGATCCCGTCGGTGCTGGATAGCCTGTACAAGCGCATCGGTACTCGGCACATTGCTGAGCTGCCACTGTCGGCTGACAAGCCATACGATGCGCGCACCACAATCCACTTCTACGACCGGGGCGATGAAGAGAAGTATTTCATCTTCATCGAGCCTGACCACGCCACCCCATACGTCTTCCGAGTCGATGGGTTGGCTTGTCCGGTTAGCGCCCCGCAATCAACGTGGGATTACATGACGGACAGCGACCCGCTCAAGAACATCTCGTTCAGCACCATCGGCGACTACACCTTCCTTGCGAATGGCTCCGTCACCGTGCGTGCCCGTACCGACGTGTTGCCGCCGAACCCGACCAACAAGGCCATCGTGTATTGCCAGTTCGCTACCTACCGCCGCACGTACACCGTTGTCATCAACGGGAACACGGACGGCACTGGCGGGCTGCGGTACTCGCTGACTATGCCGGGTTCGACGTACAGCGGCAACGAGGCTGCGGCCAACGCTGCTGCTCAGCGAATCTCGACCGACGACGTTTGCCAGCGACTGGCCTACATGATGCGGGAGGGCATCGCCACAGGTGACTGGGGCACGACCCCGCAGAACGCAGCGCCTACCTACGGCGGTGTGGTGTACACCGAGAAGATGAACGTCGAGGTCTACAGCAACTGCCTGTTCGTCACCCACCCATCCGCAGCCATCAACACCATCACCACCATCGACGGTGCGAATGGTGGCGACCTGATCGCTGTGCAGGGCCGGGTCAAGTCTCCCGCCTACCTGCCGCCATATGCGCCTGTGGGTTGGACGATCCTGATCCAGAACACCGAGGGCGTGAAGAAGAACAACTATTGGCTCCGGGCAACCGGCACCGATGGTAGCAAGGTGAAGTGGGAAGAGTCGCTGGAGGGTGGCGCACGGCTGGGCTTCGATGCCCGCACGATGCCACACCAGTTGTACCGCGACCAGATCGTGGGCGGCGTGCCTCAGTTCGTGTTGCAGGCAGGGCCATGGGATGACCGGGCCGTGGGCAACGATACCACCGTCCCGTTCCCGTCGTTCCTCGATGCGACCGTGGAGTCCGTAGGCACGTTCCAGAACCGCCTGTTCTTCACCAGCGGCGAGTCGGCCATCTTCACCCGCTCCAATGACTTCTACAACTTCTTCAAGGAGTCGAGTCAGACCGAGACGGATGCAGACCCGATTGACGCATTCAGTGACAGCGAGAAAGTGAACCTCATCAAGAACTCCGTGACGGTGGATGGGGACGCCATCTTCTTCGCCAGCAACGGCCAGTTCATGGTGGATGGCAGCAAGCCGGTGACGCACGCCAACGTGGTGTTCAAGCAGGTGACTTCGTTCCCGATGAATATCTTCGCCAAGCCAGCCATCACCGGTGAGTCGATCATGTTCGCGTATGACGCAGGCAACTGGTCGGGCATTCGTGAGATGTTCACCGACAGCGACAAGGACACCAAGTCCGCACGTCCAATCACCGAGCATGTCGAGAAGCTCATCAAGGGCCAAGTTCGCCAGCTCAGCAGCAACCCGAACACCAACACGTTGATCGTCCGTACCGATACCGACGCCCACATCGCCTACGTCTACGACTGGCTGTGGCAGGGTGCCGACAAGGTGCAGGCAGCGTGGCACAAGTGGACGTTCGACACGGGCAGCAAACTCCTGCACGTACAGTTCGTGGATGACGATGTGTACTTCATCTTCCTGCACGCTGATGGCAAGGTCTACTTGGAACACATGCCGCTGACCAACGATGACAACGACGAGGGTATGACCTTCCCGTGCCGTCTGGATCGCAAGATCACCATCAGCGCCACGTACAACAGCACGACGCAGAAGTGGGGATTCACCGTCCCGTTCGTCATCCGGGATGCCGACCTGAGCAACTGGCTGGCCATCATGGGCACCGGCTGCTACAACGACGACATCGGCACCGAGTTCGAGTTCGACCGCTCGCTGGGCCAGACCACGTTCGTGACTGACATCAGCCTGCAAGACCCGACCGTCGCCACCGAGGTGAAGATCGTGATGGGTCGCAAGTTCGTGAGCCGGTACATCCCGACTCAGCCGTTCCTTCGGGATCAGCAAGGGTTGGTGATGAGCATCGACCGAATGACCATGGGCCGCATGACCGTGAACTACGACCGCACTGGTGCCTTCAAGGTGCTGGTGAGTGACCCGATGGGTCGCCAGTGGCAGTACCCGTTCTATGGTCGGTACATGGGCAGCTTCAACAACAAGATCGGATTCGCTCCGCTCATCAGCGGTACGTTCCCGTTCCCGGTACGGTTGTTCACCCACGATGCAACAATCGAGATTCAATCCGATAGCCACCTTCCTCTCCAGATTCGTGGGTTGGAATGGGAGGGCAGCTATCAGCAGACAGGGCGGAGGTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
098a461a98bf83fb27bc71f2b915d6d132ac70fd867dad829618be98d8ff6e1c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8910
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Djurhuus,A.M., Carstens,A.B. and Hansen,L.H. 1991 — GenBank