Protein

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Genbank accession
YP_007236303.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFNQPKGSTAKEINKNPRELWRRALSDLGLNLVEGSFEDGATVTTATDAVWDINGAQCYTWGGSLPKTVNKNSTPESAGGTGLGKWVSVGDMSLRDNLLNSSNDNYGDALIAVKQPYTTAISRTQHDKNAETLSIRDFYNPADTDWTNAFKKAARVSADEGKVIFVPAGKYIVSDSIPLYDDGHVAVPAPDVQSYYKGNGTKFRGEGRKTVIIKTSASTKDINAVFYIDSTNAVPSENGKRGMEISHMSIIDLTDYSVGIYNNNGVVCSHFEDLFIMPRRVGVWLGGSFVDVTLHGIIVQGHDDSVTYPMDYGFRVGSGSGTSISMDRCHVGHAVQDAYEIRSQYSEIGVLSADNTGGVVYSFNEFRGHIQSLGSEWATAGAQNGTLLKAVKSQFSVGLVSMLKKIVNEGSQLFDLDSSQINIDQVNATDSCVFSGKPARLRNSSLIDIGYFTQYKYEQFVQPIDYDANTNTFMTVGNLGGTQYRGRQDISIHGNFAIPYAQPTSECYRIMGTKSIAAQSGCVGTIISLRGRDLTRSAVIMDVVCNGNGNIGTSANAVKRAVSDPVGLTAYSGWYEGTIDGVLYMLLRMDTDGDKNLGSFFSGVTIGRDPNLFRVVTPDEITGLVVSSIGTMKTETAS
Physico‐chemical
properties
protein length:641 AA
molecular weight: 69318,65740 Da
isoelectric point:5,48140
aromaticity:0,08892
hydropathy:-0,25148

Domains

Domains [InterPro]
DC_0369
STR
3–639
DC_0369
G3DSA:2.10.10.80
ATT
34–99
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
37–94
IPR040775 IPR011050
YP_007236303.1
1 641
Architecture
STR
ATT
STR
STR 3-33 | ATT 34-99 | STR 100-639 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007236303.1
1 641
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9859
Central domain 149 485 338 0,9900
C-terminal 486 641 155 0,9615
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-485
C-terminal
486-641

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SKML-39
[NCBI] 		1204528 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236303.1 [NCBI]
Genbank nucleotide accession
NC_019910 [NCBI]
CDS location
range 157480 -> 159405
strand +
CDS
ATGAATCCGCAATTCAATCAGCCGAAAGGTTCAACAGCCAAAGAAATCAACAAAAACCCGCGCGAATTGTGGCGACGGGCTTTGTCGGATTTAGGTCTTAATTTGGTCGAAGGTAGTTTTGAAGACGGTGCTACTGTGACGACTGCAACCGACGCCGTGTGGGATATCAATGGTGCCCAGTGTTATACCTGGGGTGGGTCTTTGCCCAAGACTGTGAACAAAAACTCAACTCCTGAAAGTGCTGGAGGTACTGGGTTAGGTAAGTGGGTTAGTGTTGGGGATATGTCATTAAGGGATAATCTTTTAAACTCCAGTAATGATAATTACGGTGATGCGCTGATAGCAGTTAAGCAGCCGTATACTACCGCAATAAGTAGAACGCAGCATGATAAAAATGCAGAAACGTTATCTATCAGGGATTTTTACAATCCGGCTGATACTGACTGGACTAATGCGTTTAAAAAAGCCGCGAGAGTAAGTGCTGATGAAGGTAAGGTTATCTTCGTCCCAGCAGGTAAGTATATCGTTTCTGACTCAATACCACTTTATGATGATGGGCATGTGGCTGTACCAGCACCTGATGTTCAATCGTACTATAAAGGTAACGGTACGAAGTTCCGTGGGGAGGGTCGAAAGACTGTAATTATTAAAACCTCCGCTAGCACAAAAGATATTAACGCCGTTTTCTATATAGATTCTACGAACGCAGTTCCTTCGGAAAACGGTAAGCGAGGCATGGAAATTAGTCACATGTCCATCATCGACCTGACCGATTATTCCGTCGGCATATACAACAATAACGGCGTAGTGTGCTCCCATTTCGAGGACCTTTTCATTATGCCACGTCGGGTCGGTGTATGGCTCGGCGGGTCGTTTGTAGACGTAACCTTACACGGCATTATCGTGCAAGGGCACGACGACTCTGTTACATACCCTATGGACTATGGGTTCCGTGTAGGCTCTGGCTCAGGCACGTCGATTTCTATGGACAGATGCCACGTAGGCCACGCGGTACAGGACGCTTATGAAATTCGTTCGCAATATTCTGAAATCGGTGTTCTTTCCGCCGACAACACGGGTGGGGTTGTGTATTCATTCAACGAGTTCCGCGGACACATACAATCATTAGGTTCAGAATGGGCTACGGCCGGGGCTCAAAACGGCACGCTACTTAAGGCCGTGAAGAGTCAGTTCTCCGTCGGTCTTGTGTCTATGCTGAAAAAAATAGTAAATGAGGGGAGTCAGTTATTCGACTTAGACAGTAGCCAGATTAACATCGACCAGGTTAACGCTACCGATTCTTGCGTATTTAGCGGTAAACCCGCCCGCCTGCGTAACTCTAGCTTAATTGATATTGGATACTTTACCCAGTACAAGTATGAGCAATTTGTTCAGCCAATTGACTATGATGCTAATACTAATACGTTTATGACTGTGGGTAACTTAGGTGGCACGCAATACAGAGGGCGTCAAGATATTTCCATTCACGGAAATTTTGCGATTCCATACGCTCAACCCACTTCCGAGTGTTACCGTATTATGGGTACTAAATCAATTGCGGCGCAATCAGGGTGTGTGGGTACTATTATATCGCTAAGAGGGCGTGACTTAACCCGAAGCGCGGTAATAATGGACGTTGTGTGCAACGGCAACGGGAATATAGGCACATCTGCCAATGCTGTTAAGCGCGCCGTATCGGACCCAGTGGGGTTAACAGCGTACTCCGGTTGGTATGAGGGCACTATAGACGGGGTTTTGTACATGCTTCTTCGCATGGACACAGACGGCGACAAAAACTTAGGCTCTTTCTTCTCTGGCGTAACCATTGGGCGAGACCCTAACCTGTTCCGTGTAGTTACCCCGGATGAGATTACTGGATTGGTGGTTTCGAGTATTGGTACTATGAAGACAGAGACTGCGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eedeae996976a8c5d3dd7c0a754c52fb3e82fad5b765e1d6c65cb701240ecdc1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6576
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank