Protein

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Genbank accession
YP_009854356.1 [GenBank]
Protein name
EPS depolymerase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTGSGGVVYATKLVDLKTKVVIEVSQLADNQGGGAEDLPVATADTLGGVKVGSGLSVTADGTLSSSGGSNVDLTPYSKKADNLSDLASKATALSNLGGAVKTDIDGLTNFAALRSREPAYEGERVYIKCHTAPALSVYLPEGGGWFIGRKTKQADDGGYVASAGGNWHWQRDKDLKDLYIGDFGGVADGITDAQPAFLAYKNFLFGTYARAKSGGTSAGAGGYSPNFALRFGAGTYFIKPGEYNKYGSKVASGAADASFNPSGYYAAGGVRIEGVAVEQGKMLATRIISDKSDAPVFLINHRRVSFHNFIWDGQQTTKVDQYNANTNPTGTNLLIGATQGVFNDTASNKQPFLKNECPGGCYARISCINAVNTGSYMFYLLDTLDSKVEQVFSSITAGPVIQVGWSGQTAGVWDHSTSLEIRNCNFGTPVAPAIWAPRCGQAIMNNCWFEHGTIPFDINNGQWDLGMICVEDCRKNPSLWYSKTTCVTLSVPTGNDFDRSSPTSGTWASYPKNPDGSDITAWTGGYDQGSWLMQNHGAYFECPVVYPWGRGYLRGRNDSDSVLWVNIGNFRNPTNGGFWRVRILGGSYYNTTTAQNILSDGLGGEATINIGRGTGTTPKISWYSEGSGPIANVTSTVFPQYQPQTSNDIVPAVWIPIRPRCGEFTVFVEGTGLTRKEAGIPAGYTASGFSQTANPGYTRIPGRFSFHTGQAGFGASGDVAAITSRSAASGTTPVDTSKPRQWLRVNVNGIEYAMPYYAYTPVITTQPIAQTVATGGTLTLTTAANDAAAYQWQKSTDSGSTWTDIANATAATYTKASVVIGDAGQYRAVIRGQLGAADATVTTNQATTNAVAVTVT
Physico‐chemical
properties
protein length:858 AA
molecular weight: 90841,83980 Da
isoelectric point:6,47967
aromaticity:0,10490
hydropathy:-0,23939

Domains

Domains [InterPro]
DC_0471
ATT
4–238
DC_0471 DC_1007
DC_0716
STR
223–765
DC_0716
IPR013783
STR
762–849
IPR013783
YP_009854356.1
1 858
Architecture
ATT
STR
ATT
ATT 4-238 | STR 239-739 | ATT 740-858
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009854356.1
1 858
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9929
Central domain 194 544 352 0,9894
C-terminal 545 858 313 0,7922
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-544
C-terminal
545-858

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage Hena1
[NCBI] 		2678601 Uroviricota > Caudoviricetes > Vequintavirinae > Henunavirus hena1 >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009854356.1 [NCBI]
Genbank nucleotide accession
NC_048828 [NCBI]
CDS location
range 67358 -> 69934
strand +
CDS
ATGGCAACTACAGGTTCTGGCGGAGTGGTTTATGCAACAAAGTTGGTCGATTTGAAGACGAAGGTCGTGATTGAAGTCTCACAGCTCGCAGACAATCAGGGTGGTGGGGCCGAAGACCTCCCAGTTGCGACAGCAGACACCCTTGGTGGTGTGAAGGTAGGCTCTGGTCTTTCTGTCACAGCAGACGGAACGCTTTCGTCATCCGGTGGGTCTAATGTTGACTTGACACCGTACTCCAAGAAAGCGGACAATCTCTCTGACCTGGCAAGCAAAGCCACTGCACTTTCAAACTTGGGCGGGGCGGTTAAGACAGATATCGACGGACTGACAAACTTTGCAGCACTTCGCAGCCGCGAACCAGCCTACGAGGGCGAACGTGTATACATCAAATGTCATACAGCTCCTGCTCTCTCAGTCTACCTACCGGAAGGTGGTGGTTGGTTTATCGGCAGAAAAACAAAACAAGCTGACGATGGTGGATACGTCGCCTCGGCGGGTGGAAACTGGCACTGGCAAAGAGACAAAGATCTGAAAGACCTGTACATCGGGGACTTCGGAGGAGTTGCAGACGGTATCACAGATGCCCAACCTGCATTCTTGGCATACAAAAACTTCCTTTTTGGAACGTATGCTCGTGCAAAATCCGGTGGTACATCAGCAGGTGCTGGAGGATATTCTCCTAACTTTGCTCTTCGTTTCGGCGCGGGTACTTACTTCATCAAACCTGGTGAGTACAACAAGTACGGATCGAAAGTTGCGTCCGGTGCAGCAGATGCTTCCTTCAACCCATCAGGGTACTACGCAGCGGGTGGTGTTCGTATTGAGGGTGTCGCTGTGGAACAAGGCAAGATGCTGGCAACACGCATCATCTCTGACAAGAGTGACGCACCAGTATTCCTGATCAACCACCGTCGTGTTTCCTTCCATAACTTCATCTGGGATGGGCAGCAAACAACAAAGGTAGACCAGTACAACGCGAACACCAACCCGACAGGTACGAACCTGTTGATCGGCGCGACCCAAGGTGTGTTCAATGATACAGCGTCCAACAAACAACCATTCCTTAAAAATGAATGCCCTGGTGGTTGCTACGCTCGAATCTCTTGTATCAACGCAGTAAACACAGGCTCTTACATGTTCTACTTGCTGGATACTTTAGACTCTAAAGTGGAGCAAGTGTTCAGTTCGATTACCGCAGGCCCGGTTATCCAGGTTGGTTGGTCAGGACAAACAGCCGGGGTATGGGATCACTCAACCTCTCTTGAAATCCGAAACTGTAACTTCGGCACTCCAGTAGCTCCAGCTATTTGGGCACCGCGTTGCGGCCAGGCTATCATGAACAACTGTTGGTTCGAGCACGGAACCATTCCTTTTGACATCAATAATGGTCAGTGGGATCTGGGAATGATTTGCGTGGAGGATTGCAGAAAGAACCCATCCTTGTGGTATTCAAAAACCACTTGTGTTACTCTCTCTGTACCAACAGGTAATGACTTTGACAGAAGCTCACCTACCAGCGGAACATGGGCCAGCTATCCTAAAAACCCGGATGGTTCGGACATCACTGCTTGGACAGGAGGATATGATCAGGGCAGTTGGTTGATGCAGAACCACGGAGCCTACTTCGAATGCCCTGTGGTCTACCCGTGGGGACGTGGATATCTCCGTGGAAGAAACGACTCAGATAGTGTCCTGTGGGTGAACATCGGGAACTTCCGTAACCCAACCAACGGTGGTTTCTGGAGAGTGAGAATCCTTGGTGGTTCGTACTACAACACCACTACTGCACAGAACATCCTCTCAGATGGTCTTGGTGGTGAGGCGACTATTAACATTGGTCGTGGTACAGGCACAACTCCGAAAATCTCTTGGTATTCCGAGGGATCTGGGCCTATTGCAAACGTAACCTCCACTGTATTCCCTCAGTACCAGCCTCAGACATCGAACGATATCGTCCCGGCAGTATGGATTCCGATCCGCCCTCGCTGTGGTGAGTTCACTGTGTTTGTTGAGGGAACGGGCCTTACAAGGAAGGAAGCGGGTATTCCGGCAGGATACACAGCCAGCGGATTCAGCCAGACTGCCAACCCGGGGTACACAAGAATCCCAGGGCGCTTTAGTTTCCACACCGGGCAGGCAGGTTTTGGGGCGAGCGGTGACGTTGCGGCGATCACAAGTCGATCAGCAGCGTCTGGGACAACTCCAGTTGATACATCCAAACCACGCCAGTGGCTTCGTGTCAACGTAAACGGGATTGAGTATGCAATGCCTTACTATGCGTACACCCCGGTTATCACAACCCAACCAATTGCTCAAACTGTAGCTACCGGGGGAACTCTGACATTGACAACAGCAGCGAACGACGCGGCAGCATATCAGTGGCAGAAGTCTACGGACTCAGGCAGCACCTGGACGGATATCGCCAACGCTACTGCGGCAACCTACACCAAGGCTTCCGTTGTGATTGGAGATGCAGGTCAATACCGGGCGGTCATTAGAGGTCAACTTGGGGCGGCGGATGCAACTGTCACTACAAACCAAGCGACCACGAATGCAGTCGCGGTAACGGTCACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c5642dd2ca095cdf6d9d09e8b22b92df9ce80cfe473b12c7c32ce82a28a9a170
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3057
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a new Erwinia amylovora bacteriophage Valentovich,L.N., Akhremchuk,A.E., Besarab,N.V. and Lagonenko,A.L. 2015-02-24 — GenBank