Protein

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Genbank accession
AFV81361.1 [GenBank]
Protein name
tail sheath protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAEQYLHGAEVVEIDNGARPIRTAQSGVIGLVGTAPDADATAFPLNTPVLIAGSRREAAKLGAGGTLPQAIDGIFDQTGAVVVVIRVDEGVDSAATQSNVIGKVDADTEQYTGILALLSAENTVKVQPRILIAPGFSNQKAVADQLVSVADKLRGYVILDGPNTTDAAAITYRELFGSRRCEVVDPWYKVWDVETSAHIIQPPSARHAGVMAKVHNTLGFWWSNSNQEILGIDGLCRPVDFKLDDPTCRANLLNAKEVTTTIQQNGFRVWGDRTCSADSKWAFKNVVITNDMIADSLVRNHLWAVDRNITKTYVEDVTEGVNNYLRHLKNIGAIAGGECWVDPELNSPDQIQQGKVYFDYDFSAYAPAEHITFRSHMVNGYLTEVV
Physico‐chemical
properties
protein length:386 AA
molecular weight: 42040,81980 Da
isoelectric point:5,01004
aromaticity:0,07772
hydropathy:-0,12280

Domains

Domains [InterPro]
IPR054564
TAS
27–87
IPR054564 IPR052042
G3DSA:3.40.50.11780
STR
41–233
G3DSA:3.40.50.11780 IPR020287
IPR035089
TAS
112–275
IPR035089
AFV81361.1
1 386
Architecture
TAS
STR
TAS
TAS
TAS 27-40 | STR 41-233 | TAS 234-275 | TAS 277-376 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFV81361.1
1 386
Domain Start End Length (AA) Confidence
N-terminal 1 369 369 0,8149
Central domain 370 375 7 0,0025
C-terminal 376 386 10 0,9912
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-369
Central
370-375
C-terminal
376-386

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaM_MAR
[NCBI] 		1229754 Uroviricota > Caudoviricetes > Vhmlvirus >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFV81361.1 [NCBI]
Genbank nucleotide accession
JX556417 [NCBI]
CDS location
range 14065 -> 15225
strand +
CDS
ATGGCTGAACAATACCTACACGGCGCAGAAGTCGTCGAAATTGATAATGGGGCCCGCCCCATCCGCACCGCTCAAAGTGGTGTGATTGGTTTGGTGGGGACGGCACCGGATGCCGATGCCACCGCCTTTCCTCTGAATACGCCGGTACTGATTGCCGGTAGCCGCCGAGAAGCGGCCAAGCTGGGCGCAGGTGGTACATTGCCACAGGCAATTGATGGCATTTTTGACCAGACAGGCGCAGTTGTGGTGGTGATTCGTGTGGATGAGGGCGTGGATAGCGCGGCCACTCAATCCAACGTGATCGGCAAAGTGGATGCCGACACCGAGCAGTACACCGGCATTCTGGCGCTGCTGTCTGCCGAGAACACCGTCAAGGTGCAGCCTCGCATTTTGATTGCCCCTGGTTTCTCAAACCAAAAGGCAGTCGCTGACCAGCTGGTGAGCGTAGCCGATAAGCTGCGTGGCTATGTCATTCTGGATGGTCCAAACACTACCGATGCCGCCGCGATTACCTACCGTGAGCTGTTCGGCAGTCGCCGCTGTGAAGTGGTGGACCCTTGGTACAAGGTGTGGGATGTGGAGACCAGTGCTCACATTATCCAACCGCCTTCAGCTCGCCATGCTGGCGTTATGGCGAAAGTCCACAATACGCTGGGTTTCTGGTGGTCCAACTCGAACCAGGAAATCCTTGGCATTGATGGCCTGTGCCGTCCGGTGGACTTCAAGCTGGACGACCCGACCTGTCGTGCCAACCTGCTGAACGCGAAGGAAGTGACCACGACTATTCAGCAAAATGGTTTCCGTGTCTGGGGTGACCGCACTTGTTCTGCCGACTCTAAGTGGGCATTCAAGAACGTGGTTATTACCAACGACATGATCGCGGACAGCCTAGTTCGCAATCACCTGTGGGCGGTTGACCGCAACATCACCAAAACCTACGTCGAAGACGTGACGGAAGGGGTGAACAACTACCTGCGCCACCTCAAAAACATCGGTGCGATTGCCGGTGGTGAGTGCTGGGTGGACCCGGAGCTGAATAGCCCCGACCAAATTCAACAGGGTAAAGTCTACTTCGATTATGACTTTAGCGCCTACGCGCCTGCAGAGCACATCACGTTCCGCAGCCATATGGTTAACGGCTATCTGACGGAGGTTGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aaaaac54460bdc0d9a0408e3552a61e54aca71f3e1e125a2d413415a2e9c290d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9581
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50