Protein

View in Explore
Genbank accession
AFD22206.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MDGLKKEAKITVVDEPRLKPITDENIAFYNMDINTAILTFQVRKQDYPLEISKVNTDIYAYFVSDNGSSTGRVQVDYVNPMQGIIQLTLDNDFLKAATDTYVTGQIYIKAVGRKDTVVLNEFRFYVKDALINQIDADIKIGYIREIDDLIDNFKEKIEIVSQNFSDIETAQADFTAFVNAQKNAFIKQVNDMKNEMNAFAENTQKDLIDRLNSIDDKMLETLKELENGTENFITESELKTLLVNYPTNEQLTTQLDSKANVGDVTNSQSVELPDFDKMIKEKVDEALAKATLQRFTFTDDNGYIPRIDNPDLYTMSGIDTSGFYYAYNPVNSPDPNNQSGYLLVMARSSSYKKVLFFPFNRHVFYSRNKMGNTAGWGIWYDATNNINVGEIIADVTET
Physico‐chemical
properties
protein length:398 AA
molecular weight: 45289,24560 Da
isoelectric point:4,52844
aromaticity:0,10553
hydropathy:-0,42085

Domains

Domains [InterPro]
DC_1215
STR
1–375
DC_1215
G3DSA:2.60.40.3350
ATT
18–133
G3DSA:2.60.40.3350 Coil cd19958
IPR018913
ATT
19–155
IPR018913
AFD22206.1
1 398
Architecture
STR
ATT
STR
STR 1-17 | ATT 18-155 | STR 156-379 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage StB27
[NCBI] 		1147044 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus hominis
[NCBI] 		1290 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFD22206.1 [NCBI]
Genbank nucleotide accession
JN700519.1 [NCBI]
CDS location
range 32250 -> 33446
strand +
CDS
ATGGATGGTTTAAAAAAAGAAGCGAAAATCACAGTTGTTGATGAGCCACGTTTGAAGCCTATTACTGACGAGAATATCGCTTTTTATAACATGGATATCAATACAGCAATTTTAACGTTTCAAGTAAGAAAACAAGATTATCCATTAGAAATCAGTAAAGTAAATACTGATATTTATGCTTACTTTGTATCTGATAATGGATCGTCAACTGGACGTGTTCAAGTTGATTATGTTAATCCAATGCAAGGTATCATTCAACTCACTTTAGATAACGACTTCTTAAAAGCTGCAACAGACACTTATGTGACAGGTCAAATCTACATCAAAGCTGTTGGTCGTAAAGATACAGTTGTATTAAATGAATTCCGTTTCTATGTCAAAGATGCGTTAATTAATCAAATTGATGCAGATATCAAAATCGGTTACATCCGTGAAATTGACGATTTAATTGATAACTTCAAAGAAAAAATTGAAATTGTTTCACAAAATTTTAGCGATATCGAAACAGCACAAGCTGATTTCACTGCGTTTGTAAATGCACAAAAAAATGCTTTTATTAAACAAGTTAATGATATGAAGAATGAGATGAATGCATTTGCGGAAAACACACAAAAAGATCTTATAGATAGACTAAACTCAATCGACGATAAAATGTTAGAAACATTAAAGGAACTTGAAAACGGAACAGAAAATTTTATCACTGAAAGCGAATTAAAAACGTTACTTGTAAATTATCCTACAAACGAACAACTGACTACACAATTAGATAGTAAAGCAAATGTAGGTGACGTTACCAATTCGCAATCAGTTGAATTACCCGATTTTGACAAAATGATTAAAGAAAAAGTTGATGAAGCGCTTGCTAAAGCAACATTACAACGTTTCACATTTACTGATGACAACGGATATATCCCTAGAATTGATAACCCTGATCTCTATACTATGAGTGGTATTGATACCTCAGGTTTTTATTATGCATACAACCCAGTTAATTCGCCCGATCCAAATAATCAAAGCGGTTATTTACTTGTTATGGCAAGAAGTAGTAGTTATAAGAAAGTGTTGTTCTTCCCATTCAATCGTCATGTATTTTATTCACGCAATAAGATGGGCAATACAGCAGGTTGGGGAATTTGGTACGATGCAACAAATAATATAAACGTAGGTGAAATAATTGCGGATGTTACTGAAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c312d3ac63ecbdc2d4afa86b09c00aaca9f4a3fb6fc37456f432a5d703a39c8a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7716
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Novel Phages Isolated in Coagulase-Negative Staphylococci Reveals Evolutionary Relationships with Staphylococcus aureus Phages Deghorain,M., Bobay,L.M., Smeesters,P.R., Bousbata,S., Vermeersch,M., Perez-Morga,D., Dreze,P.A., Rocha,E.P., Touchon,M. and Van Melderen,L. 2012 22923589 GenBank