Protein

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Genbank accession
YP_010078807.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MAIKLSNNAVSHLAAELAQGDTQIILTPGEGSMFPTLGAGDYFQATLAKASGQYEIVRATARDIDTLTVLRGQENTQALHFAAGDRIELRVTAGVLNALADAVRQIRPKPGDIKMWSGAVANIAAVHGSGWQLADGTNGTIDLRDRFIVGAGASYAPGNTGGANTVAISAAQMPAHNHGVSDPGHIHGVSDPTHAHSVYDPGHSHNTNSNYYNIGAGGSGTATPYNGGGQFVSGGAIIAAATGIAIYGAATGISIQSHATGISTQNAGGGAEHENRPPYFALAFIQYTGVGAIDI
Physico‐chemical
properties
protein length:295 AA
molecular weight: 30034,85450 Da
isoelectric point:5,95396
aromaticity:0,06441
hydropathy:-0,06102

Domains

Domains [InterPro]
DC_0891
STR
1–293
DC_0891
cd22641
STR
89–183
cd22641
SSF88874
STR
109–285
SSF88874
YP_010078807.1
1 295
Architecture
STR
STR 1-293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010078807.1
1 295
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,7416
Central domain 187 284 99 0,0052
C-terminal 285 295 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-284
C-terminal
285-295

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage GP4
[NCBI] 		2282904 Uroviricota > Caudoviricetes > Gervaisevirus >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010078807.1 [NCBI]
Genbank nucleotide accession
NC_054964.1 [NCBI]
CDS location
range 53671 -> 54558
strand -
CDS
ATGGCTATCAAGCTGTCCAACAATGCAGTGTCCCATCTTGCCGCCGAGCTGGCGCAGGGCGACACCCAAATCATCCTGACGCCGGGCGAGGGCAGCATGTTCCCGACACTCGGCGCCGGAGACTACTTCCAGGCCACGCTCGCGAAAGCATCCGGCCAATACGAGATCGTGCGCGCCACTGCGCGCGACATCGACACGCTGACCGTGCTGCGAGGGCAGGAGAACACCCAGGCGCTGCACTTCGCAGCCGGCGATCGTATCGAGCTGCGCGTCACGGCGGGGGTGTTGAATGCGCTCGCCGACGCGGTGCGCCAGATTCGTCCCAAGCCGGGAGACATCAAGATGTGGAGCGGCGCGGTCGCCAACATCGCCGCCGTGCATGGGTCTGGATGGCAGCTTGCCGATGGGACGAATGGGACCATTGATCTACGGGACCGGTTCATCGTCGGGGCGGGTGCATCCTATGCGCCTGGGAACACCGGCGGAGCCAACACCGTCGCTATTTCCGCTGCACAGATGCCCGCGCACAATCACGGCGTCAGCGATCCGGGCCACATCCACGGGGTGAGCGACCCGACCCATGCGCACAGCGTCTACGATCCGGGCCACTCGCACAACACGAACTCGAACTACTACAACATCGGGGCTGGAGGTAGCGGCACTGCTACGCCGTACAACGGCGGCGGCCAATTTGTATCCGGCGGCGCGATCATCGCGGCGGCCACCGGCATCGCCATCTATGGCGCGGCCACCGGCATTTCGATTCAGAGCCATGCAACTGGCATCAGCACGCAGAACGCCGGCGGGGGTGCTGAGCATGAGAACCGGCCGCCGTATTTCGCGCTGGCGTTCATCCAGTACACCGGTGTCGGTGCGATTGACATCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d5acbd61067516814655953c9ad6659cdd5ceaf4bc0b73d1f598751f2d54bce0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8160
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete sequence of phage GP4 Wang,R., Tong,Y. and Liu,H. 2019-06-18 — GenBank