Protein

View in Explore
Genbank accession
AXC36550.1 [GenBank]
Protein name
putative DNA condensation protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFARLVKYGNKIPPPAGIRKINTYGLGHLFLTTDGKLFAYGSNNEYRFGTPTTSIVGGVPSLVLINVAMIYCHPAYTICLMNDGRYMAAGNLSQFGLGSQTSFVDVSSFFSTLGTITKIAITRRETPGTSTIYALNSTGILYAMGSNNRGQFGNNTLTGKIGEFVQINTNCKDVVTCSYETVVVLKNDNTAWFCGNYGLTSGSSDIKVFTNIGDTDILSINSDGSGGSLLYTKSTGLYVRGLLTSLYGLTYTSGSQGTNRLAVLPFTYDSANFRYWTDPEGQGPSCWIQDLSTGTRYATGSTNSSNGRLGFSVPTASGNSFREQVINLPEGTSTMTVLSVGMGNNYSALISTDGIVYGSGAFNGYGAYPGTEVVNYPDSNPTLFQYEPIKLGI
Physico‐chemical
properties
protein length:395 AA
molecular weight: 42213,90370 Da
isoelectric point:7,51385
aromaticity:0,11392
hydropathy:-0,05823

Domains

Domains [InterPro]
DC_0433
ATT
1–128
DC_0433 IPR009091
IPR009091
STR
9–261
IPR009091 IPR000408
IPR009091
STR
13–243
IPR009091
IPR051553
Unmapped
31–200
IPR051553
DC_0433
ATT
114–240
DC_0433
AXC36550.1
1 395
Architecture
ATT
STR
STR
ATT 1-240 | STR 241-261 | STR 293-391 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXC36550.1
1 395
Domain Start End Length (AA) Confidence
N-terminal 1 226 226 0,0908
Central domain 227 384 159 0,6870
C-terminal 385 395 10 0,8221
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-226
Central
227-384
C-terminal
385-395

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage UB
[NCBI] 		2268588 Uroviricota > Caudoviricetes > Asteriusvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC36550.1 [NCBI]
Genbank nucleotide accession
MH383160 [NCBI]
CDS location
range 226093 -> 227280
strand +
CDS
ATGTTACCTTTTGCAAGACTGGTCAAGTACGGGAATAAGATACCACCACCCGCTGGTATCCGCAAGATTAATACTTATGGATTAGGGCATTTATTTTTAACTACCGATGGTAAGTTATTTGCATATGGTTCAAATAATGAGTATCGTTTTGGTACACCAACCACTTCGATTGTTGGTGGAGTGCCTAGCTTAGTTCTTATAAATGTAGCTATGATATACTGTCATCCAGCATATACTATATGTCTAATGAATGATGGAAGATATATGGCGGCGGGGAATTTAAGTCAATTTGGATTAGGTTCACAAACAAGTTTCGTTGATGTGAGTTCATTTTTCAGCACATTAGGAACTATTACAAAGATTGCAATTACACGCCGTGAAACACCAGGAACTAGTACAATATACGCATTGAATAGTACTGGAATATTATATGCTATGGGTTCAAATAACCGTGGACAGTTTGGTAATAATACCCTAACTGGGAAGATAGGTGAATTTGTACAAATCAACACTAACTGTAAAGATGTGGTAACCTGTTCTTATGAAACAGTTGTTGTGTTAAAGAACGATAACACAGCTTGGTTTTGTGGTAATTATGGATTAACATCTGGATCATCTGATATTAAGGTATTCACCAATATAGGTGATACTGATATCCTTTCAATCAATTCGGATGGTTCAGGCGGCTCATTGTTATACACCAAGAGTACTGGATTATATGTTCGTGGTTTGCTCACTTCATTGTATGGATTGACGTATACTTCAGGTTCCCAGGGAACTAACAGATTAGCAGTTCTTCCCTTTACATACGATAGTGCTAATTTTAGATACTGGACTGATCCAGAGGGTCAAGGACCATCATGTTGGATTCAGGATTTGAGTACAGGTACACGTTATGCAACTGGCTCTACTAATAGTAGCAATGGCAGATTAGGATTTAGTGTTCCGACAGCTTCTGGTAATAGTTTCAGAGAGCAGGTTATAAACCTACCAGAAGGTACATCAACAATGACAGTACTGTCAGTTGGTATGGGAAATAATTATTCTGCATTAATTAGCACCGATGGTATAGTATATGGTTCAGGTGCATTCAACGGGTATGGTGCATATCCAGGAACAGAAGTGGTGAACTACCCTGACTCCAATCCTACACTATTTCAATATGAGCCAATTAAATTGGGTATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
92f0b068bad83d058e15573693f757fb0293b185ca40f319c22e7e6db0b30312
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8053
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization Of A New Bacterial Virus From Orangutan (Pongo pygmaeus) Ahmad Hisham,U.B., Ramli,N.A., Mohamad Zawawi,N.A. and Mat Arip,Y. 2008-12 — GenBank
Genome Assembly Of Bacteriophage Specific To Escherichia coli 0157:H7 Ahmad Hisham,U.B., Ramli,N.A., Mohamad Zawawi,N.A. and Mat Arip,Y. 2019-07 — GenBank