Protein

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Genbank accession
AVP40516.1 [GenBank]
Protein name
putative tail tubular protein A
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MILEGVYPSFLKGVSQQTPQERSDGQLGAQLNLLSDAVTGLRRRGGVKFQTKLAGIPNSSYIRLIDINGVNYIMIVDTVTGTLKIYNFEGSLLKAHQTDYLKASNGKASIRSTVSRNNCFVLNTEQVITKTPTGGTNPIPNPSTMGYISIRSGQFSKMYSVDIKSGSYTLNFGVGTSGSEAWQATPEWVATEMESRIKADATLNARYDVVREGSTVALKAKSDTDTNLLVIESGTGSTYIQTSNSSRVQGKQDIIANLPNILDKYIIAVGTVGNSAYYQYNADSSTWKECGVYEEPYKFTNEPIYWYFDDTDTIQVKSLDIQPRAAGDDDNNPLPKFVDFSITGINAYQSRLVLLSGSYVNMSATADFNVYMRTTVEELQDDDPIEVSSTALSAAQFEYAVPYNKDLVLLAQNQQAVIPANSTVLTPKTAVIYPSSKANISMASEPQVVSRSLYYTYQRGTDYYQVGEMIPNAYSDAQYYAQNLADHIPLYATGVCTSITGSTTDNMAVFSSDQKELLIHQYLWAGEDRPLMSFHKWELPYDVLHVQFLQEYLVLFMDVGDDLVVGTINVQLNQLDNKPIPFLDIYQYVDIVDGEGTLPEFLPEGELVAAVYSSETMRHAMVQYEIEGTKIKCQFNGRIYLGVPYESSLTLTPPFVKDSRGRVVTGSNSIVVDLTMTFKGTGEFEYHVSDAYGDVFDGETSAQAWSEAQLGYTRVNTVSDVKFTCGTLLSSTEFSLRTTGTTELNIISTGYNIRVPNRGRRRL
Physico‐chemical
properties
protein length:763 AA
molecular weight: 84449,66620 Da
isoelectric point:4,80877
aromaticity:0,10223
hydropathy:-0,24260

Domains

Domains [InterPro]
DC_0058
STR
1–763
DC_0058
IPR058003
TTP
7–761
IPR058003
AVP40516.1
1 763
Architecture
STR
STR 1-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVP40516.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,9786
Central domain 137 338 203 0,1380
C-terminal 339 763 424 0,1941
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-338
C-terminal
339-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_AbaP_D2
[NCBI] 		2126803 Uroviricota > Caudoviricetes > Autographivirales > Beijerinckvirinae > Friunavirus
Host Acinetobacter baumannii
[NCBI] 		470 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVP40516.1 [NCBI]
Genbank nucleotide accession
MH042230 [NCBI]
CDS location
range 34169 -> 36460
strand +
CDS
ATGATTCTTGAGGGAGTGTACCCGTCATTCTTGAAAGGTGTATCACAGCAAACACCTCAAGAGCGTAGTGACGGACAATTAGGCGCACAGCTTAATTTATTATCTGATGCTGTAACAGGTTTACGTAGACGTGGTGGGGTTAAATTCCAAACCAAGTTAGCAGGTATTCCTAATAGTAGTTATATACGTTTAATTGACATCAATGGTGTTAATTACATTATGATCGTAGATACGGTTACAGGTACTTTAAAGATTTATAATTTTGAGGGTTCCTTACTTAAAGCACATCAAACAGATTATCTTAAAGCCTCCAATGGTAAGGCTAGTATCCGTAGTACAGTCTCACGTAATAATTGCTTTGTATTAAATACCGAGCAAGTTATTACTAAGACACCTACAGGTGGTACTAACCCAATACCTAATCCAAGTACTATGGGTTATATTAGTATTCGTTCTGGTCAGTTCTCTAAGATGTATTCGGTAGACATCAAGTCAGGTTCTTATACCTTGAACTTTGGTGTAGGTACGTCTGGTAGTGAGGCATGGCAGGCTACTCCTGAATGGGTAGCTACTGAGATGGAGAGTAGGATTAAAGCAGACGCTACTCTTAACGCACGTTATGATGTTGTACGAGAAGGTAGCACAGTTGCACTTAAAGCTAAATCTGATACAGATACAAACTTACTAGTGATTGAGTCTGGTACAGGTAGTACCTATATTCAGACGAGTAATTCTAGTCGTGTACAGGGTAAGCAAGACATTATTGCTAATCTACCTAATATCTTAGATAAGTATATTATTGCAGTAGGTACAGTAGGTAATTCGGCTTATTATCAATATAATGCGGACTCTAGCACTTGGAAAGAGTGTGGTGTATATGAAGAACCTTATAAGTTCACTAACGAACCTATTTACTGGTACTTTGATGATACGGATACTATCCAAGTTAAAAGCCTAGATATTCAACCGCGTGCAGCAGGTGATGATGATAATAACCCATTACCTAAGTTTGTGGATTTCAGTATTACAGGTATTAATGCATACCAATCACGCTTAGTACTGCTTAGTGGTTCATACGTTAATATGAGTGCTACAGCAGACTTTAATGTCTATATGCGTACTACTGTAGAGGAATTACAGGATGATGATCCAATTGAGGTGTCTAGTACTGCTTTAAGTGCTGCACAGTTTGAATATGCTGTTCCGTATAATAAAGATTTAGTTTTATTAGCTCAGAACCAACAAGCTGTTATCCCAGCCAATAGTACTGTACTTACACCTAAGACGGCTGTTATCTACCCAAGTTCAAAAGCTAACATTAGTATGGCTAGTGAACCACAGGTTGTATCCCGTAGTTTGTATTATACATATCAACGTGGTACAGATTATTATCAAGTTGGTGAGATGATTCCTAATGCTTATTCAGATGCTCAGTACTATGCTCAGAACTTAGCAGACCATATTCCGCTATATGCTACAGGTGTCTGTACTTCAATCACAGGTAGTACTACAGATAATATGGCAGTGTTCAGTTCTGATCAGAAAGAGTTACTTATACATCAATATTTATGGGCAGGTGAAGACCGTCCGTTAATGAGCTTCCATAAATGGGAATTACCTTATGATGTACTTCACGTACAATTTCTACAAGAGTATTTAGTATTGTTTATGGATGTTGGTGATGATTTAGTGGTTGGTACTATTAACGTACAGTTAAACCAACTAGACAATAAACCTATTCCATTCTTGGACATTTACCAATATGTAGATATTGTAGACGGGGAAGGTACACTACCTGAGTTCCTACCAGAAGGTGAGTTAGTAGCTGCGGTATACAGTTCTGAGACTATGCGTCATGCTATGGTTCAATATGAAATCGAAGGTACTAAGATTAAGTGTCAATTCAATGGACGTATTTATCTAGGTGTACCTTATGAAAGTTCACTCACACTAACACCTCCTTTTGTTAAAGATAGTAGAGGTCGAGTAGTTACTGGTAGTAACAGTATAGTTGTCGATCTTACAATGACATTCAAGGGCACAGGTGAGTTTGAGTACCATGTTTCTGATGCTTATGGTGATGTGTTTGATGGTGAAACGTCTGCACAAGCTTGGTCGGAAGCACAACTAGGGTATACGAGAGTAAACACAGTAAGTGATGTTAAGTTCACATGTGGTACGCTATTAAGTTCAACAGAGTTTAGTCTTAGGACCACAGGTACGACGGAACTAAATATTATTAGCACTGGTTATAATATCCGTGTACCAAACAGAGGACGGAGACGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e5f6f92f8e3089706edd17141ac75cef4e34e74ff1f9e2a40f03f3657d6719f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8700
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Acinetobacter baumannii bacteriophage vB_AbaP_D2 Yuan,Y. 2019-03-21 — GenBank