Protein

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Genbank accession
XLM27946.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,61
Protein sequence
MHVVLDAVRSWGAIGPLPASFPPLEHNQPIDSLVGSKEILEGIEGIIEAIRAAAAGTTDQHIHDYNNPHRVTKAQVGLSLVPNYAMASDQQHLDANRNDLFTNPRGTLALVNKFAVNPLNAHIAARGNVHGLTAADINLGNVPNYPAATPTTAVDVTNDSVLLTPYTASILYSQIGDASRINELEEKLNQHISNENNPHVVTADQVNAYTKTQVDQLLAGLGGGDASTFGGLTPEQWKDEFPSFGDIERMAAGYNANWDDVQLKIDTLPVIVDDTSEYDRMELIQGVMAGFHAYAGFNSWWDCTIVRDDCIAHPKSPANPYAVIPERLGYAQESWVSHRYGQYWVENGVVKSACIDETKVDEMIPIPVEWTAPIDGNIPSSIWANKTSLYMLTGKFIFSSTGESAIFEHQDLYRCVKGGTSELLVPAANKPWAIFTNTEDTYPGEMTVVVNIGPASSADYVYTAYGIPSFISAFNDFVNNTIKPLNHVIDSMSIGCTHIIMHSIDPLVAPEDYTSESSKVHVMEIIRNGNDTSFMVISPLWFDGRGNDVTANVNSNPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAGPYIQLAAGHNFTVTVNTLNQVMFWGDSPDNSLLWNGRGTRVKHIEPTPPTGP
Physico‐chemical
properties
protein length:647 AA
molecular weight: 70522,82980 Da
isoelectric point:4,68907
aromaticity:0,08964
hydropathy:-0,20773

Domains

Domains [InterPro]
DC_0943
STR
27–103
DC_0943 DC_1039
DC_0031
STR
89–175
DC_0031 IPR009091
IPR009091
STR
555–622
IPR009091
XLM27946.1
1 647
Architecture
STR
STR 27-645 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM27946.1
1 647
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,9933
Central domain 272 488 218 0,6645
C-terminal 489 647 158 0,7007
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-488
C-terminal
489-647

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Flora_bin_2
[NCBI] 		3377939 Viruses >
Host Pseudomonas aeruginosa PA14
[NCBI] 		652611 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM27946.1 [NCBI]
Genbank nucleotide accession
PQ533668 [NCBI]
CDS location
range 4707 -> 6650
strand -
CDS
ATGCATGTAGTTTTAGATGCTGTTCGGTCATGGGGTGCAATTGGTCCATTACCTGCTTCTTTCCCACCTTTAGAACACAATCAACCTATTGATTCATTAGTAGGTAGTAAAGAGATTCTTGAAGGTATCGAAGGGATTATAGAAGCTATCCGTGCTGCGGCTGCCGGTACAACTGACCAACATATTCATGATTATAATAACCCACACAGGGTAACTAAAGCACAAGTTGGCTTGTCACTAGTTCCAAACTATGCAATGGCAAGTGATCAACAGCATTTAGATGCTAATCGTAATGATCTATTTACGAACCCACGTGGTACATTAGCATTAGTTAATAAGTTTGCCGTAAATCCGCTTAATGCCCACATAGCGGCTAGGGGTAACGTACACGGTCTAACAGCAGCTGATATTAATTTAGGTAATGTTCCTAACTACCCAGCTGCAACACCAACTACTGCGGTAGACGTAACTAATGATTCGGTATTATTAACACCTTATACTGCATCTATTCTCTATAGTCAGATTGGTGATGCTTCTAGAATTAATGAACTAGAAGAGAAACTTAATCAACATATTAGTAATGAAAATAACCCACACGTTGTAACTGCCGACCAGGTTAATGCATATACTAAAACACAAGTTGATCAACTGCTAGCAGGATTAGGTGGTGGTGATGCTTCTACCTTTGGTGGATTAACACCTGAGCAATGGAAAGATGAATTCCCATCATTCGGCGATATTGAAAGGATGGCAGCCGGCTATAACGCTAACTGGGATGATGTACAATTAAAGATAGATACATTACCAGTTATTGTAGATGACACTAGCGAATATGACCGAATGGAATTAATTCAAGGTGTTATGGCAGGTTTCCATGCTTATGCTGGATTTAATAGTTGGTGGGATTGTACAATCGTCAGAGATGACTGTATAGCTCATCCTAAATCGCCAGCTAACCCTTATGCTGTTATACCAGAGCGTTTAGGATATGCTCAGGAATCTTGGGTGTCTCACCGATATGGTCAGTATTGGGTAGAAAATGGTGTAGTCAAGTCAGCATGTATCGATGAAACTAAAGTCGATGAGATGATACCAATTCCAGTAGAATGGACTGCACCTATAGATGGGAATATTCCTTCGAGTATCTGGGCGAATAAAACATCTCTGTATATGTTAACAGGTAAGTTCATCTTTAGTTCAACAGGTGAATCAGCAATCTTTGAGCACCAAGATCTTTATCGTTGTGTTAAAGGTGGTACATCTGAACTATTAGTACCTGCTGCTAATAAACCATGGGCTATATTTACCAATACTGAAGACACCTATCCTGGTGAAATGACAGTTGTTGTAAACATAGGTCCAGCTAGCAGTGCTGACTATGTATATACAGCTTATGGTATCCCAAGCTTCATTAGTGCTTTTAATGATTTTGTTAACAACACAATTAAACCATTGAATCATGTTATTGATTCAATGTCAATTGGTTGCACCCACATCATCATGCATTCAATAGATCCATTAGTTGCTCCTGAAGATTACACATCTGAATCTAGTAAAGTACATGTCATGGAAATCATCCGTAATGGTAATGATACATCCTTTATGGTTATCTCGCCATTATGGTTTGATGGACGTGGTAACGATGTAACTGCTAATGTAAATAGTAACCCAATTGGTGGTGTATCAGGATTGTACACACATTACACTGTGATGTATGGTGATGGCCAAATCGCTTTCTTCGGAAATAACGATAATGGACAATGTGACGTAGATGATCATGCTGGACCATATATTCAATTGGCAGCAGGGCATAATTTCACTGTGACAGTAAATACTTTGAATCAAGTCATGTTCTGGGGAGATTCACCTGATAACTCCTTATTATGGAATGGCAGGGGTACACGTGTGAAACATATTGAACCAACTCCACCCACTGGTCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cfbcfdc61639a9989f50072ff26fffbb38030b338035865e7244e2a4a3e32141
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6817
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Temperate phage-antibiotic synergy is widespread - extending to Pseudomonas - but varies by phage, host strain, and antibiotic pairing Fatima,R. and Hynes,A.P. 2024 — GenBank