Protein

View in Explore

Genbank accession

XBA13494.1 [GenBank]

Protein name

minor tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Protein sequence

MSTPTLPGSTGYGVDIYGTVLYGYSQPKSLSVEPFTATQTDYGRITLTWASPNDNNWNKLRLVRSTDGYPSTPADGTILLDARVDAIRTSYDDASLTQGVIYYYSIFMSQDAPEWDSGTTYIQSAVVFYNGTYWFSLQASNTNHTPSIGSAFWAPTTYFPTWYPAGSVASLAVKNQGYPDRLYDRTPQPYKIVKSDLFSNTTIDNPALAKFLSLFGFQLDAQKTRYDQILSFNDADLVSADNLEHLGQQFGVRTDYISSPRLRRQRIKNATVNYRLKGTVTGIHNAIAAITGWDSEIVVGPNMLLNSDQSAFAHPVYDTWNADTNYFINQFVSYNGFNYKNIVASKGAAQAPTGTNSSNTWWQVQTNSIDSTTLLNPSTKGISTWGRYLNSGVTSTLDAVVGIQHPTIAATNTWNALRFAVTNSPVAGLTGVQSIATLSTPAWSSGTNYVKNNYVSYNTFFYKALRNSGPSSTIGAVTPGTNDLYWELQASNVGVGRGQFVRDGIPLPRQITWDPVLPFSVGTTVQHMGILYICLVSNTGQSPTGRYASNTYWQYISSAEQAFTASHYTTRTVSATNVNARSHLLWYDDDGNTLFTSTAPTQATFFSRFDTDYVDLDGNTDNTTGQAWTATPTDVNLWESTFGQARVNPVTFNALVSKPKYTYLLVDDGRANGVIGYTFGIDYEDTTNYNNGVVFRSTSGTNKWFCTRSNLVLYLGGIEVVKASWTRLGAYERITITLNGTSIIVKKYNRDGTGNMTTLASITDANLQTETRHGLIQRYALGV

Physico‐chemical properties

protein length:	783 AA
molecular weight:	86254,47950 Da
isoelectric point:	6,32364
aromaticity:	0,12644
hydropathy:	-0,29949

Domains

Domains [InterPro]

DC_1214
STR
1–463

DC_1214 IPR003610 DC_1794

IPR013783
STR
35–116

IPR013783 IPR006521 IPR003610 IPR003610

IPR003610
CBM
112–156

IPR003610 G3DSA:2.10.10.90

G3DSA:2.10.10.90
STR
441–554

G3DSA:2.10.10.90

XBA13494.1

1 783

Architecture

STR

RBD

STR 1-560 | RBD 561-783

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1214	STR	DC_1214	1	463	Novel HMM	DC_1214	Central	Low	Positional only	45 proteins / 45 hits
IPR013783	STR	IPR013783	35	116	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003610	CBM	DC_0028	112	156	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR006521	STR	DC_0712	229	297	InterPro cluster	Tail protein I	Central	Low	Positional only	25 proteins / 25 hits
IPR003610	CBM	DC_0028	317	364	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	440	489	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	440	560	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	441	554	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	510	556	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
DC_1794	RBD	DC_1794	560	783	Novel HMM	DC_1794	C-terminal	Low	Positional only	4 proteins / 4 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XBA13494.1

1 783

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	370	370	0,8707
Central domain	371	621	252	0,4166
C-terminal	622	783	161	0,5617

Note: Constraints were applied during segmentation.
Fixed 20 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-370

Central
371-621

C-terminal
622-783

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Streptomyces phage GiJojo [NCBI]	3136618	Viruses > unclassified bacterial viruses >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

XBA13494.1 [NCBI]

Genbank nucleotide accession

PP725410 [NCBI]

CDS location

range 53161 -> 55512
strand +

CDS

ATGAGTACACCAACACTTCCTGGCAGCACTGGCTATGGAGTAGACATCTATGGAACTGTGCTCTACGGATATTCTCAGCCAAAGAGCCTGAGTGTTGAGCCCTTCACTGCCACACAGACTGATTACGGAAGAATTACTCTGACCTGGGCTTCTCCCAATGACAACAACTGGAACAAGTTGCGTCTTGTGAGAAGCACAGACGGATATCCTTCTACTCCTGCTGACGGAACAATTCTTCTTGATGCACGAGTAGATGCTATCCGTACGTCCTACGACGACGCGTCCTTGACTCAGGGAGTGATCTACTACTACTCCATCTTCATGAGCCAGGACGCCCCCGAGTGGGATTCAGGGACAACGTACATCCAGAGCGCAGTGGTGTTCTACAACGGAACCTATTGGTTCTCCCTACAGGCTTCCAACACCAACCACACGCCTTCTATCGGCTCAGCCTTCTGGGCTCCCACTACGTACTTCCCTACGTGGTATCCGGCAGGAAGCGTAGCGTCTTTGGCCGTAAAGAATCAGGGATATCCAGATCGTCTGTACGACAGAACTCCACAGCCCTACAAGATTGTCAAGTCGGACTTGTTCTCCAATACGACTATTGACAATCCCGCTCTGGCTAAGTTCCTATCGCTGTTCGGATTCCAACTGGACGCACAGAAGACTCGTTACGATCAAATCCTTTCCTTCAATGACGCTGATCTTGTGTCGGCTGACAATCTGGAACACCTGGGACAGCAGTTCGGAGTGCGTACAGATTACATCTCCTCTCCACGTCTGCGTAGACAGCGCATCAAGAATGCTACTGTCAACTACAGACTGAAGGGAACTGTAACCGGAATTCACAACGCAATTGCTGCGATTACCGGATGGGATTCCGAGATCGTAGTCGGTCCGAATATGCTTCTTAATTCAGATCAATCGGCTTTCGCACATCCTGTGTACGACACCTGGAATGCTGATACGAACTACTTCATTAATCAGTTCGTTTCCTACAACGGATTCAATTACAAGAACATCGTGGCGTCCAAGGGTGCTGCACAGGCTCCTACAGGAACGAACTCCTCCAACACCTGGTGGCAGGTTCAGACCAATAGCATTGACTCAACCACGCTGCTCAACCCTTCTACGAAGGGGATCAGTACGTGGGGACGCTACCTGAACTCTGGAGTAACCTCCACCTTGGATGCGGTTGTGGGAATTCAGCACCCTACAATCGCTGCTACAAACACTTGGAACGCTTTGCGCTTTGCAGTGACAAACTCTCCTGTTGCAGGACTGACAGGTGTGCAGTCCATTGCTACGCTGAGTACTCCAGCATGGTCAAGCGGTACGAACTACGTCAAGAACAACTACGTATCGTACAACACCTTCTTCTACAAGGCCCTTCGTAACTCCGGTCCGTCCTCCACCATCGGTGCTGTGACTCCAGGTACGAATGACCTGTACTGGGAGCTACAGGCTTCCAACGTAGGTGTTGGTCGTGGTCAGTTCGTTCGTGACGGTATTCCTCTGCCTCGCCAGATCACGTGGGACCCGGTACTTCCATTCTCTGTGGGTACTACAGTACAACACATGGGAATCCTGTACATCTGCCTCGTGTCCAACACGGGACAGTCTCCTACAGGACGTTACGCCTCCAACACCTACTGGCAGTACATCAGTTCTGCGGAGCAGGCGTTTACGGCGTCACACTACACGACTCGTACCGTGTCCGCAACCAATGTCAACGCTCGTTCTCACCTCCTTTGGTACGACGACGACGGTAACACACTGTTCACGTCTACGGCTCCCACACAGGCTACGTTCTTCTCTCGCTTCGATACGGACTACGTAGACCTTGACGGGAACACGGACAATACCACAGGACAGGCATGGACGGCTACCCCTACAGACGTCAATCTGTGGGAAAGCACATTCGGTCAGGCACGTGTGAATCCGGTTACCTTCAATGCGCTGGTATCCAAGCCCAAGTACACCTATCTATTGGTGGACGACGGAAGAGCCAATGGTGTTATCGGATACACATTCGGTATTGACTACGAAGACACCACGAATTACAACAATGGTGTAGTTTTCCGCAGCACTTCAGGAACTAACAAATGGTTCTGTACTCGAAGCAACCTGGTTCTTTATCTGGGAGGTATTGAGGTTGTGAAGGCGTCTTGGACCCGTCTGGGTGCCTACGAGAGAATTACCATTACCCTCAATGGAACCAGCATCATCGTAAAGAAGTACAATCGTGACGGAACTGGAAACATGACAACCCTGGCTTCCATTACGGATGCCAATCTCCAGACGGAAACTCGTCATGGACTAATTCAACGTTACGCACTCGGAGTATAG

Genome Context

Tertiary structure

PDB ID

7164a4460ecc9cb0e42bd711bd58da9f37ce05a5496342bc3604248fb91bd272

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2990

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence