Protein

View in Explore
Genbank accession
QBX25082.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MQIWVHDTRMRKVTAINNAIPRMLSFYNSTWHRYLPQATNTFDFTIPKLYSGKLHEDLSFINDRAYFSFRNQGKDYVFYVANMVEDDFSIQLTCNDTNLELNNEQANAFSSDSAQTLAWYLEHMDLLAFTSLKIGINEISDRKRTLTFDSQETKLARLQSLMSQFDAEYEFVTELNNNGTFKQITLNIYQSPDSTHHGVGKVRSDVLLYYGNDVKGVQVTTDKTQLFNMAVFTGQDGLSMKDVERSDKNEDGKEEFYTRKGSEAVYAPLSAEMYPSTLRDGDNWTRKDFQTEYTDVNDLTAYAFRTMKQYAYPIITYTASVQSSFLGNYSDLALGDTVKIYDGNFVGGLALEARVTEQIISFDNPNNNSLVFSNYVKLKNTVSATLQKRLAELVEANTPYTIKLAKNNSLIFKNGQGETIITPSLYKADKLITADVTWRWSLDGNVTIGMTYTVKGAEVTEQSVLTVAAYIGNDEASVTEIDVVNVNDGANGADGAKGDKGDDGKDGKDGRGLERSEDFYQLTSIGTAPSYPMVGGRNLLRNSKGPFKPNANKIDNWQRFENTYVYLENGKQYVLSGETDGNFTSIYDSLKESDNVVLWLVNPNTSFNKIMSDDKTGTTGTVFTWNSASGTYQLRVNTYRTVSTKSAWNIQIEEGTTKTPYSQAPEDLGWSTDMKVPTADKRFLWKLHIDYFSDGTVAVTQPTIAGIMGIQGLQGLPGETGADGKTQYTHIAYADNATGGGFSQTDQTKAYIGMYQDFVEAGSNDPTKYLWSKWKGSDGAQGIPGKAGADGKTPYIHFAYADDNKGTNFSLTDKNQQYMGYYSDYTEADSTDYKKYKWVDRLANVKFGNKNLILKSNDLANPHKQSGANTTVTSTDDYFVIKSTGYTANAWGGMSWNMSISEVKAGEEFSILMPVYIDSSIDLDNGWNFNLKNHPSNSTAYNYSIPVTKKDEWFNVAITFKTTKDVVFDTYPFYVYLVKNGLVRIKPPMLVRGNVIPSDYVVASEDTQEQIDSKADDALTQEQLNALAEKNRTLEAELEAKAALATVEAWKEAYDSYVAQNNQDKTEAEQKLITLTNRVAEWVKDWEDKKVQWSFLDTNMDFGAEGLRLGKKGSPTSILISNDRIGFYSGGSEVASMSNGTLTIDNGIFAKSLQIGHFREEVYEGDNNINVIRWVD
Physico‐chemical
properties
protein length:1176 AA
molecular weight: 131650,54220 Da
isoelectric point:4,92887
aromaticity:0,11480
hydropathy:-0,53316

Domains

Domains [InterPro]
DC_0266
STR
1–644
DC_0266 DC_1971 Coil Coil
DC_0921
STR
775–1176
DC_0921
QBX25082.1
1 1176
Architecture
STR
STR
STR 1-644 | STR 661-1176
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan238
[NCBI] 		2548062 No lineage information
Host Streptococcus gallolyticus
[NCBI] 		315405 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25082.1 [NCBI]
Genbank nucleotide accession
MK448880.1 [NCBI]
CDS location
range 18668 -> 22198
strand +
CDS
ATGCAAATTTGGGTTCATGATACAAGAATGCGCAAGGTAACAGCAATAAACAACGCTATACCTCGCATGCTATCGTTTTACAATAGTACGTGGCATAGGTATCTACCACAAGCAACGAACACCTTTGATTTCACCATTCCTAAACTATACAGCGGAAAATTACACGAAGATTTAAGCTTTATCAATGATAGAGCTTATTTTTCTTTTCGTAATCAAGGTAAAGACTATGTGTTTTATGTTGCGAACATGGTCGAAGATGATTTCAGTATCCAACTGACTTGTAATGATACGAACTTAGAGCTTAATAACGAGCAAGCTAATGCGTTTAGTAGTGACAGTGCACAAACGCTCGCATGGTATTTGGAACACATGGATTTGTTGGCTTTTACGTCGTTGAAAATTGGTATAAACGAGATTTCAGACCGCAAACGCACACTAACATTTGATTCACAAGAAACGAAGCTAGCACGTTTGCAATCGTTGATGTCACAATTTGACGCAGAATACGAGTTCGTAACAGAACTAAACAACAATGGTACGTTTAAGCAAATCACTTTGAATATTTACCAATCACCAGACAGCACGCACCACGGCGTGGGTAAGGTGAGAAGCGACGTCTTGCTTTACTATGGCAACGACGTTAAGGGTGTACAAGTTACAACTGATAAGACACAGCTATTTAACATGGCAGTCTTTACAGGTCAAGACGGACTTTCTATGAAAGATGTCGAACGTTCAGACAAGAACGAGGACGGGAAAGAAGAATTTTACACCCGCAAAGGCAGCGAAGCGGTATATGCCCCACTTTCAGCCGAGATGTACCCGTCAACGTTGCGAGATGGTGATAACTGGACAAGAAAAGACTTTCAAACGGAATATACAGACGTTAACGATTTAACAGCGTACGCATTCCGCACAATGAAGCAATATGCTTATCCGATTATCACATATACCGCAAGTGTTCAATCTAGCTTTTTAGGCAATTACAGCGATTTAGCGCTTGGTGATACTGTTAAAATTTACGACGGCAATTTTGTGGGCGGTCTCGCTTTAGAAGCTCGTGTAACAGAACAAATTATCAGTTTCGATAATCCAAATAACAATTCGCTTGTATTCTCGAACTATGTCAAGCTTAAGAATACTGTTTCGGCGACATTGCAAAAGCGTTTGGCAGAGCTAGTCGAAGCTAACACGCCTTACACAATTAAATTAGCAAAAAATAATAGCCTTATCTTTAAAAACGGGCAAGGTGAAACGATTATCACCCCAAGTCTTTATAAAGCCGATAAGCTTATCACGGCTGATGTAACATGGCGCTGGTCTTTAGATGGCAATGTCACAATTGGCATGACATACACCGTTAAGGGTGCAGAAGTCACTGAACAGTCAGTCTTGACAGTAGCAGCGTACATTGGAAATGACGAAGCTTCGGTAACTGAAATCGATGTCGTCAATGTTAACGACGGTGCAAACGGCGCAGACGGTGCTAAAGGTGATAAGGGTGATGATGGTAAAGACGGTAAGGACGGACGAGGTTTAGAGCGTTCGGAAGATTTTTATCAGTTGACGTCAATAGGGACAGCACCAAGCTATCCAATGGTCGGTGGTCGTAACTTGCTAAGAAATTCCAAAGGTCCATTTAAGCCAAATGCTAATAAAATTGACAACTGGCAAAGATTTGAGAACACCTATGTTTACCTTGAAAATGGAAAACAATACGTTTTGAGTGGTGAAACTGACGGTAATTTTACAAGTATATATGATAGTTTAAAAGAATCTGATAATGTTGTGCTTTGGCTAGTTAATCCCAACACAAGTTTTAATAAGATTATGTCCGACGATAAGACCGGAACGACTGGAACTGTATTCACTTGGAACAGCGCAAGCGGAACTTATCAACTACGTGTCAACACATATCGCACAGTGTCAACTAAGAGTGCTTGGAATATCCAAATCGAAGAAGGCACAACCAAAACCCCTTATTCACAAGCTCCCGAGGATTTAGGCTGGTCTACTGACATGAAAGTGCCAACGGCTGACAAGCGTTTCTTATGGAAGTTACACATTGACTATTTTAGTGATGGAACGGTTGCAGTCACACAGCCAACTATTGCTGGAATTATGGGTATTCAAGGTTTGCAAGGTTTGCCGGGCGAAACTGGTGCAGACGGTAAAACGCAGTATACGCATATTGCTTATGCCGATAATGCGACTGGTGGCGGATTTAGTCAGACCGACCAAACAAAAGCCTATATTGGCATGTACCAAGATTTCGTCGAAGCTGGAAGCAATGACCCAACCAAATACTTGTGGTCTAAATGGAAAGGTTCAGACGGTGCGCAGGGTATTCCTGGTAAGGCAGGAGCTGACGGTAAGACACCTTACATCCACTTTGCTTATGCTGACGACAACAAAGGTACTAACTTTAGCTTAACCGACAAGAACCAACAATACATGGGTTACTACAGCGACTACACGGAAGCTGACAGCACCGACTACAAAAAATATAAGTGGGTTGATAGGCTGGCGAATGTTAAGTTTGGGAATAAAAACCTCATTTTAAAATCGAATGACCTTGCAAATCCGCATAAGCAATCTGGTGCTAACACGACAGTAACATCAACTGATGACTATTTCGTTATAAAAAGCACTGGTTATACAGCGAACGCATGGGGCGGTATGTCGTGGAATATGTCTATTTCGGAAGTCAAAGCTGGTGAGGAATTCTCTATTTTAATGCCAGTCTATATTGACAGTTCGATTGATTTGGATAACGGTTGGAATTTTAATCTTAAAAATCATCCATCAAATTCAACGGCATATAACTACAGTATACCTGTAACTAAGAAAGACGAATGGTTTAACGTTGCAATAACGTTTAAAACTACTAAAGATGTCGTTTTTGATACTTATCCGTTTTATGTTTATCTCGTCAAGAATGGTCTAGTACGCATTAAGCCGCCTATGCTCGTTCGTGGAAATGTGATACCAAGCGATTATGTTGTCGCCTCAGAAGATACCCAAGAACAAATCGACAGCAAGGCAGATGACGCACTCACACAAGAGCAGTTAAACGCTTTAGCCGAAAAGAATAGAACGCTTGAAGCCGAGCTAGAAGCGAAAGCAGCGCTTGCGACTGTTGAAGCATGGAAAGAAGCCTATGACAGCTATGTTGCTCAAAACAACCAAGACAAAACAGAAGCTGAACAGAAACTTATCACGTTAACCAATCGTGTAGCTGAATGGGTTAAGGATTGGGAAGATAAGAAAGTCCAATGGTCGTTCTTAGACACTAATATGGATTTTGGCGCAGAGGGCTTGCGTTTGGGTAAGAAAGGTAGTCCAACATCTATCCTTATTTCAAACGACCGTATCGGCTTCTACTCGGGTGGTTCGGAAGTAGCGAGTATGTCAAACGGTACATTGACTATCGATAACGGTATATTCGCCAAGAGCTTGCAAATCGGACATTTTCGTGAAGAAGTGTACGAGGGCGACAATAATATTAATGTCATTCGTTGGGTTGACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
737d5bbcfe20778f6471402ac1ed3a96298bdb6c9db1e333987d79b5bed497aa
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2788
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank