Protein

View in Explore
Genbank accession
YP_012143709.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MKKILDSAREYLRTNNKIKTACLITLELPSSTGSSSAYIYLTDYFRDVRYNGILYTSGKVKSITTHKQNRDLSIGSLSFTITGTAEDEVLKLVQNGVSFLDRSISIHQAVIDEEGNILPVDPDTNGPLLYFRGKITGGGIKDNIGTSGISTSTITWNCSNQFYDFDRVNGRFTDDADHRGLEIVAGQLVPSNGAKRPEYQEDYGFFHANKSISILAKYQVQEERYKLQSKKKLFGLSRSYSLKKYYETVTKEVDIDFNLAAKFLPVVYGTQKIPGIPVFADTELHNPNIVYIVYAFCEGEIDGFLDFYFGDVPMICIDPNDSKSRTCFGTKKVAGDTMQRIASGQSSSEPSVHGQEYRYNDGNGDIRIWTYHGKADQSAADVLVNIAKEKGFYLQNMNENGPEYWDSRYKLLDTAYAIVRFTINENRTEIPEVSAEVQGKKIKIYHSDGRVTADKTSLNGIWQTLDYLTSDRYGANITIDQFPLQQLIQEAAILDIIDESYQVSWQPYWRYVGWTDAVGENRQIVQMNTILDTSESVFKNVQGLIESYGGAINNLSGQYRITVEKFSNTPLEIDFLDTYGDLELSDTTGRNKFNSVQASILDPALSWKTNSITFFNSVFKEQDKGLDKKLQLSFANITNYYTARSFADRELKKSRYSRTLTFSLPYHFIGIEPNDPIAFTYGRYGWDKKYFLVDEVENSREGKINITLQEYGEDVFINSEQVDNSGNDIPDVSNNVLPPRDFIYTPTPGGQVGSIGKNGELSWLPSLTNNVVYYSIVHSGHADPYIVQQLETNPNLRMIQEIIGEPAGLAVFEIRAVDINGRRSSPVTLSVELNSAKNLSVVSNFRVTNTASGDASEFVGPDVKLAWDKIPEEDIIDGIFYTLEIYDNLDRLLRSVRIEDQYVYDYLLIYNKADYALHNEDALGINRKLRFRIRAEGDNGEQSVDWASI
Physico‐chemical
properties
protein length:949 AA
molecular weight: 107208,48070 Da
isoelectric point:5,00919
aromaticity:0,11275
hydropathy:-0,41770

Domains

Domains [InterPro]
DC_0187
STR
230–948
DC_0187
IPR032876
ATT
594–686
IPR032876
YP_012143709.1
1 949
Architecture
STR
ATT
STR
STR 230-593 | ATT 594-686 | STR 687-948 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012143709.1
1 949
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9454
Central domain 313 525 214 0,3253
C-terminal 526 949 423 0,0048
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-525
C-terminal
526-949

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GRNsp8
[NCBI] 		2948589 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus GRNsp8
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012143709.1 [NCBI]
Genbank nucleotide accession
NC_106733 [NCBI]
CDS location
range 22481 -> 25330
strand +
CDS
ATGAAGAAAATTCTTGACAGTGCAAGAGAGTATTTAAGAACCAATAATAAAATAAAAACTGCATGCCTTATCACTCTTGAATTGCCAAGCTCTACTGGATCAAGTTCTGCCTACATATATCTTACAGATTATTTTAGAGATGTAAGATATAATGGGATTCTTTATACATCCGGTAAGGTTAAGTCTATAACAACACATAAACAAAATAGAGATCTTTCCATTGGTAGTCTTTCTTTTACTATCACAGGTACTGCTGAGGATGAAGTATTAAAACTAGTCCAAAATGGTGTATCATTCCTAGATAGATCCATCTCAATCCATCAAGCGGTTATTGATGAAGAAGGTAACATTCTTCCTGTAGATCCAGACACTAATGGTCCTTTACTTTACTTCCGTGGTAAAATCACTGGTGGTGGTATTAAGGATAACATTGGTACTTCTGGAATTAGCACATCCACTATCACATGGAACTGTTCGAACCAGTTTTACGACTTTGATAGAGTAAACGGACGTTTCACAGACGATGCTGACCATAGGGGACTTGAGATTGTTGCTGGCCAATTAGTTCCATCTAATGGTGCTAAGCGACCTGAATATCAAGAGGACTATGGATTCTTCCACGCTAACAAGAGTATTTCTATTCTTGCTAAATATCAGGTTCAGGAAGAACGTTACAAGTTACAGTCTAAGAAAAAGTTATTTGGTCTTTCTAGAAGCTATAGCCTAAAGAAATACTATGAGACTGTGACTAAGGAAGTTGACATCGATTTTAACTTAGCGGCTAAGTTCCTTCCAGTAGTGTATGGAACTCAGAAAATCCCTGGAATCCCCGTATTTGCGGATACTGAGCTGCATAACCCTAATATCGTATATATAGTATACGCCTTCTGTGAGGGTGAGATTGATGGATTTCTAGATTTCTACTTTGGTGATGTACCAATGATCTGTATTGATCCTAACGATAGTAAGTCTCGTACTTGCTTTGGTACTAAGAAAGTAGCTGGAGATACCATGCAACGTATTGCTTCTGGTCAATCAAGCTCTGAACCCTCTGTTCATGGACAGGAATATAGGTATAACGATGGTAATGGCGATATACGTATCTGGACTTATCATGGTAAAGCAGACCAATCTGCTGCGGATGTTCTAGTTAACATTGCAAAAGAGAAAGGTTTCTACCTACAGAACATGAATGAGAATGGACCAGAATACTGGGACTCTCGTTATAAACTGTTAGATACTGCTTACGCTATTGTTCGCTTTACTATTAATGAAAACAGAACAGAAATTCCAGAAGTTAGCGCTGAAGTTCAAGGTAAGAAGATTAAGATCTATCATTCAGATGGTAGAGTAACTGCTGATAAGACTAGCTTAAATGGTATCTGGCAAACTCTGGACTACCTAACCTCTGATCGCTATGGTGCTAATATCACTATTGATCAGTTCCCTCTCCAGCAACTTATTCAAGAAGCAGCTATTCTGGATATAATTGATGAATCCTATCAGGTTTCTTGGCAACCCTACTGGAGATACGTTGGATGGACTGATGCTGTAGGAGAGAATAGACAAATAGTTCAAATGAACACTATTCTCGATACCTCTGAGTCAGTATTTAAAAACGTGCAGGGATTAATAGAGTCTTATGGGGGTGCTATCAACAACTTATCTGGTCAGTATAGAATAACTGTTGAGAAGTTCTCGAATACTCCACTGGAGATTGACTTCTTAGATACCTATGGTGATCTGGAATTGTCAGATACTACTGGCAGAAATAAATTCAACTCAGTACAAGCCTCTATATTAGATCCTGCATTAAGTTGGAAAACTAACTCTATCACATTCTTTAATTCTGTATTTAAAGAACAAGATAAAGGATTAGATAAAAAACTTCAGCTTTCTTTTGCAAACATCACTAACTATTATACTGCACGTAGCTTTGCAGATAGAGAACTGAAAAAATCTCGTTACTCACGAACTCTCACATTCTCATTACCATATCATTTCATAGGCATTGAGCCTAACGATCCAATTGCTTTTACATATGGTCGTTATGGTTGGGATAAGAAGTACTTCCTAGTTGATGAAGTTGAAAACTCTAGAGAAGGTAAGATTAATATTACACTGCAAGAGTATGGTGAGGATGTATTCATTAACTCCGAGCAGGTTGATAATAGTGGTAACGATATCCCTGATGTTAGTAATAACGTACTGCCTCCTAGAGACTTTATCTATACACCAACACCGGGTGGACAAGTAGGATCTATTGGTAAGAATGGTGAGCTATCTTGGCTTCCTAGCTTAACTAATAACGTTGTTTACTATTCCATTGTTCATTCTGGACATGCTGATCCTTACATCGTACAGCAATTAGAAACTAATCCAAATCTACGAATGATCCAAGAAATTATTGGAGAACCTGCTGGTTTAGCAGTCTTTGAGATTAGAGCTGTAGATATTAATGGTAGACGAAGTTCTCCTGTAACACTATCAGTAGAACTTAACTCTGCTAAAAACTTAAGCGTCGTTAGTAATTTCAGGGTTACTAACACAGCTTCAGGAGATGCATCGGAGTTTGTAGGACCAGACGTTAAGTTGGCCTGGGATAAAATTCCAGAAGAAGATATCATTGATGGAATCTTCTACACTCTAGAAATCTACGATAACCTAGATCGTTTATTAAGAAGTGTACGAATTGAAGATCAGTATGTCTACGATTATCTACTGATATACAATAAGGCAGACTATGCTCTTCATAACGAGGATGCTCTAGGTATTAATAGGAAGTTACGCTTCCGTATAAGAGCAGAAGGTGATAATGGCGAGCAATCTGTGGATTGGGCATCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e0c7460baa27ef68e6dd92520a0949bb824da63745aa22b153bf09de22ded807
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8230
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A cocktail of three virulent phages controls multidrug-resistant Salmonella infection in poultry Li,Y., Lv,P., Shi,D., Zhao,H., Yuan,X., Jin,X. and Wang,X. 2022-07-06 — GenBank