Protein

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Genbank accession
QYW02336.1 [GenBank]
Protein name
tail knob protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVVGSYASVTRGVSEQVPQDRHPGQMWEQVNMVSDPVVGCARRPGSLLKDYKVLGAGKSLDGLKADIRMYRTFTFFHNSKEYALLYRCDAAVSPAALPAFLCYCKTDARFLNVALADPDGMAPWVTGGVSALCTVGDYIAIAANKLGPGYSLDDRFAGHNMHGVSWVRGGAYSRTYTLKITRRSDGVQFTAAYTTMASSYPYLLNTSDIPSSAPDYQKQINDRVNDYNSKVNQWIGDAQASIQPQNIAEKLRASLQSQGFTNCDRRGGTVILDNISFMSCDDGGDGTTFRAVFNTLDDVGKLSSIHWNNKPIQIKSNTQVDPYYMVFKTDTGEAYGTGKWVEGPAQVVQPGQVFAIGGITKDGNTFAIGSGPEQLNAYSTDFQVPKFSGSVCGDKDQTGAIPYFFGKRISLLAMFQDRLVIVSDGTVFMSRTGDYFNFFRKTMLSVHDDDPIQAYALGAADDVITRCVTYNKNLFLFGVRNQYTIPGNTAASPATITISPVASERDAIICQPVVHGNIVFYGSQVASNGDVPYSGIINQFQLGLFQDIPETFQISKQLSRYIKGRPTEMATVSAPPALLVRTDGYDNGFYVYTYLDAPGTQQREFDSWSRWLLSDALGVVAGVSSYQQKLLSFSIALDAKAGQASNIIVMCNEFSLDTADRTRPYLDGMRPMDQAGPILTKLNTSGMWDDAYASIGAAHAEFLLNGRLTGWANFTAQYPAIPPADYWGGFDYPSYVVPTPPYVRDSNDKAIVNGRLVINKYTVSFTDSSGCVVNMIDKAGNERHIVSYAGRQVGHSNNLVGRVPISTTNFPVPVGRSNIEHKVKFMAKVGLPMTISAIEWVGQFFTSGRRV
Physico‐chemical
properties
protein length:853 AA
molecular weight: 93297,25430 Da
isoelectric point:7,12149
aromaticity:0,11020
hydropathy:-0,18030

Domains

Domains [InterPro]
IPR058003
TTP
1–48
IPR058003 IPR058003
DC_0058
STR
1–853
DC_0058
QYW02336.1
1 853
Architecture
STR
STR 1-853
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW02336.1
1 853
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,9878
Central domain 161 387 228 0,2428
C-terminal 388 853 465 0,2985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-387
C-terminal
388-853

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage Paku
[NCBI] 		2859650 Uroviricota > Caudoviricetes > Autographivirales > Pakuvirus > Pakuvirus paku
Host Burkholderia cenocepacia
[NCBI] 		95486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW02336.1 [NCBI]
Genbank nucleotide accession
MZ326863 [NCBI]
CDS location
range 24627 -> 27188
strand +
CDS
ATGGCGAAGGTTGTTGGCTCGTACGCCAGCGTCACGCGAGGCGTCAGCGAGCAGGTTCCGCAGGATCGGCATCCGGGCCAGATGTGGGAGCAGGTGAACATGGTTTCGGACCCGGTGGTGGGCTGCGCCCGCCGTCCCGGATCGCTCCTCAAGGATTACAAGGTGCTGGGGGCGGGCAAGTCGCTGGATGGCCTCAAGGCGGACATCAGGATGTACCGCACGTTCACGTTCTTCCACAACAGCAAGGAGTACGCGCTCCTGTACCGATGCGATGCTGCGGTGAGTCCGGCCGCGCTTCCGGCGTTTCTCTGCTACTGCAAGACCGACGCACGCTTCCTGAACGTGGCACTCGCAGACCCTGACGGCATGGCCCCGTGGGTGACGGGCGGCGTCTCGGCGCTATGCACGGTGGGTGACTACATTGCCATCGCGGCGAACAAGCTCGGCCCCGGCTACAGCCTCGACGATCGCTTCGCCGGGCACAACATGCACGGTGTCTCGTGGGTGCGCGGCGGCGCATACAGCCGCACGTACACGTTGAAGATCACGCGCCGTTCGGATGGTGTGCAGTTCACTGCCGCGTACACGACGATGGCATCGAGTTACCCATACCTACTGAATACCTCAGACATTCCATCGTCCGCGCCGGACTACCAGAAGCAGATCAATGACCGCGTGAACGACTACAACTCGAAGGTGAACCAGTGGATCGGCGACGCGCAGGCGAGCATCCAGCCGCAGAACATTGCCGAGAAGCTCCGCGCTTCGCTGCAATCGCAGGGCTTCACGAACTGCGATCGGCGGGGCGGCACGGTCATCCTCGACAACATCAGCTTCATGTCGTGCGATGACGGCGGCGACGGGACCACGTTCCGCGCCGTGTTCAACACGCTCGACGACGTTGGCAAGCTGAGCAGCATCCACTGGAACAACAAGCCTATCCAGATCAAATCGAACACGCAGGTGGACCCGTACTACATGGTCTTCAAGACGGACACCGGTGAGGCGTACGGGACGGGTAAGTGGGTAGAAGGCCCGGCGCAGGTAGTGCAACCGGGTCAGGTGTTCGCCATCGGGGGCATCACGAAGGACGGAAACACGTTTGCCATCGGTTCGGGGCCGGAGCAACTCAACGCGTACTCGACGGACTTTCAAGTGCCGAAGTTCTCGGGCTCGGTGTGTGGAGACAAGGACCAGACGGGCGCGATTCCGTACTTCTTCGGCAAGCGCATCAGTCTGCTTGCGATGTTTCAGGACCGCCTCGTTATCGTCTCGGACGGTACGGTGTTCATGTCGCGCACGGGTGACTACTTCAACTTCTTCCGGAAGACGATGCTGTCCGTGCACGACGACGATCCGATCCAAGCTTACGCCCTCGGTGCGGCGGATGATGTGATTACGCGTTGCGTGACCTACAACAAGAACCTGTTCCTGTTCGGCGTGCGCAACCAGTACACGATCCCCGGAAACACCGCAGCGTCGCCCGCGACGATCACGATCTCGCCGGTAGCGTCCGAGCGTGACGCGATCATTTGTCAGCCAGTGGTACACGGGAACATCGTCTTCTACGGCTCGCAGGTGGCGTCGAACGGTGATGTGCCATACAGCGGCATCATCAACCAGTTCCAGCTCGGTCTGTTTCAGGACATCCCTGAGACATTCCAGATCAGCAAGCAGCTCTCTCGCTACATCAAGGGCCGCCCGACTGAGATGGCTACGGTGAGCGCACCTCCTGCGTTGTTGGTGAGGACTGACGGCTACGACAACGGGTTCTACGTTTACACGTACCTTGATGCTCCGGGCACGCAGCAGCGCGAGTTCGACTCGTGGAGCCGCTGGTTGCTTAGCGATGCGCTCGGTGTGGTGGCGGGCGTTAGCTCGTACCAGCAGAAACTCCTGTCGTTCTCCATCGCGCTCGACGCGAAGGCGGGGCAGGCATCGAACATCATCGTCATGTGCAACGAGTTCAGCCTGGACACGGCCGACCGGACACGCCCGTACCTCGATGGGATGCGCCCAATGGATCAGGCAGGGCCGATTCTCACAAAGCTGAACACGTCAGGCATGTGGGACGACGCGTACGCCTCCATCGGCGCAGCACACGCCGAGTTTCTGCTGAACGGTAGGCTGACTGGCTGGGCGAACTTCACAGCGCAGTACCCAGCTATTCCACCTGCGGACTATTGGGGCGGGTTCGACTACCCGAGCTACGTTGTTCCGACACCGCCGTACGTGCGGGATTCGAACGACAAGGCCATCGTGAACGGGCGGCTCGTCATCAACAAGTACACCGTCAGCTTCACCGATAGCTCCGGTTGCGTGGTGAACATGATTGATAAGGCCGGGAACGAGCGGCACATCGTCAGCTACGCGGGGCGGCAGGTCGGCCATTCCAACAATCTCGTCGGACGCGTGCCGATTAGCACCACGAACTTCCCGGTCCCGGTTGGGCGCTCGAACATCGAGCACAAGGTCAAGTTCATGGCAAAGGTTGGCTTACCCATGACCATCTCCGCGATTGAGTGGGTGGGCCAGTTCTTCACTTCAGGCAGGAGAGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03f1c906229b9a6eaa1576d1f12784bfae2106058fdd567c12262fdb17311b01
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2883
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Burkholderia cenocepacia phage Paku Rezene,S., Yao,G., Burrowes,B., Liu,M. and Gill,J. 2022 35343779 GenBank