Protein

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Genbank accession
YP_009808032.1 [GenBank]
Protein name
putative glycosyl hydrolase
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MADVLEGLAPKHYHGQNQVWYENGKQYIAVNVGEDDDPVYQYREVLYRWIGNNNRWYLAYSNNPDSVGTVSLDNARYFTGAPYRGDVALFGDGLKELPDPLPFFTGSQYKLYSNGADTLENYVNFGYEGTANPYGIDNIYRMCKLRQANAQYLYTVTRPGQEGFNWGVGAFVGTIPTAIYPNIWSLQFRLGDFVDGQDRMWLLYGGSNVTWTEQGTGQQKSAQISFGAHVSRSGELMYYRRFNSTYVYARVQLASLSGWHQVQLTQDANHNCTITVDKGTPNEQSASCSLKLWGKQFDSVLFNCGPECVGTTGVPITDVYDKSWIGNIDIRRFYIDTHGTFNENVIPRYYEQPYLNIEIQAEGSSTWQDVSSSLVNWPHEQDNRRCIYTLPDVPDGQYFIRYKTNYGVSNTLPVRIKGDISRKTELYSDFSDLIEMRENWLVAHKQWGGTGVVGNQTALLNGGVVRENVEVYPDYSDVANAVKGVLRLRGHGTYYDGDVIGVDRIGHPAPDGRKTEVGSALVTREYLGPGSFRCKLRSPYRKGAATALWTFHYEEIYENDPRWQSFLDEGLHAQGNEDDGYYIVRNHEIDIEYPTALKDAVDMEDVSADKARLNTWEGELRTWDLPESDPNYFSEYTDFFEKWVDEALSDGKWHEIRFDWHTGEQNPPAGKPAKRVDFYVDGVLKWTNTTHIPDIPGRLWIALWYPRAPGNRWAGHSADYIYDSIDVDYFHYIPFPDEPVRQLGETYPADVWRDWKWENFFSGFYNELPPPYELPKPYDDDMPKDADGTWLPTSYLAAGKNPPQYITPYRLEWRNDRKLQGSGNGEFQFLNLVQGARYKMTIKVARTTTQAAGLQLVTFEPGNDVIDIPMFEGDTYELTFIAQSQQRVSLRRNTTNNKYEGLTDIRLERI
Physico‐chemical
properties
protein length:910 AA
molecular weight: 104360,41720 Da
isoelectric point:4,99253
aromaticity:0,14066
hydropathy:-0,62989

Domains

Domains [InterPro]
DC_0211
ATT
1–428
DC_0211 cd00413 DC_0213
G3DSA:2.60.120.200
STR
461–733
G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
461–735
G3DSA:2.60.120.200
IPR013320
STR
518–727
IPR013320
YP_009808032.1
1 910
Architecture
ATT
ENZ
STR
RBD
ATT 1-428 | ENZ 429-460 | STR 461-735 | RBD 736-910
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009808032.1
1 910
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7298
Central domain 11 209 200 0,9249
C-terminal 210 910 700 0,2227
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-910

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaP_KF1
[NCBI] 		2041472 Uroviricota > Caudoviricetes > Autographivirales > Maculvirus > Maculvirus KF1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009808032.1 [NCBI]
Genbank nucleotide accession
NC_048035 [NCBI]
CDS location
range 18466 -> 21198
strand +
CDS
ATGGCTGATGTACTAGAGGGTTTAGCCCCTAAGCATTACCACGGTCAGAATCAGGTTTGGTACGAAAATGGCAAACAGTACATTGCGGTGAACGTCGGTGAAGACGATGACCCAGTGTACCAGTACCGCGAAGTGCTTTACCGCTGGATTGGTAACAACAACCGCTGGTACTTAGCCTATAGCAATAATCCTGACTCTGTAGGCACAGTGAGCCTTGATAACGCACGTTACTTCACAGGTGCGCCTTATCGTGGCGACGTAGCCTTGTTTGGTGATGGTCTGAAAGAACTACCAGACCCACTACCATTCTTCACAGGCTCACAATACAAGCTTTATAGTAATGGTGCTGACACGCTTGAGAACTATGTTAACTTCGGTTACGAGGGCACAGCGAACCCTTACGGTATTGATAACATTTACCGTATGTGTAAGCTGCGACAAGCAAATGCTCAGTATCTTTACACAGTTACTCGCCCCGGTCAAGAGGGCTTTAACTGGGGTGTAGGTGCATTCGTGGGTACAATCCCGACTGCAATCTACCCGAACATTTGGTCACTACAATTCCGATTGGGTGACTTCGTTGATGGACAAGACCGCATGTGGCTGCTGTATGGTGGCTCTAACGTGACTTGGACAGAACAGGGCACTGGTCAACAAAAGAGTGCTCAGATTAGCTTTGGTGCGCATGTATCACGCTCTGGTGAGTTGATGTACTACCGTCGATTCAACAGTACTTACGTGTACGCACGTGTGCAATTAGCAAGTCTGAGTGGTTGGCATCAAGTGCAACTAACGCAGGACGCGAACCACAACTGCACGATTACAGTTGATAAAGGTACGCCGAATGAACAGTCAGCTTCGTGCTCATTGAAGCTATGGGGTAAACAGTTTGACAGTGTATTATTCAACTGTGGCCCTGAGTGTGTGGGCACGACTGGCGTCCCTATTACTGATGTTTACGACAAGTCGTGGATTGGTAACATTGACATCCGTCGTTTCTACATCGACACGCATGGCACATTCAACGAGAACGTGATTCCGCGCTACTACGAGCAGCCGTACTTGAACATTGAGATTCAAGCTGAGGGCAGCAGCACGTGGCAGGACGTGTCGAGTTCTCTGGTGAACTGGCCGCATGAGCAGGATAACCGCCGTTGTATTTACACGTTGCCTGACGTACCTGATGGTCAGTACTTTATCCGGTACAAGACCAACTACGGTGTGAGTAACACACTACCAGTGCGCATCAAGGGTGACATTAGCCGCAAGACTGAGTTGTATTCCGACTTCTCTGACTTGATTGAAATGCGTGAGAACTGGCTCGTTGCACATAAGCAATGGGGTGGTACTGGCGTTGTGGGCAACCAAACCGCACTGCTGAACGGTGGTGTGGTACGTGAGAACGTTGAGGTTTACCCTGACTACTCCGATGTAGCAAATGCTGTGAAAGGTGTGCTGCGTCTACGTGGTCATGGTACGTACTATGATGGTGATGTCATCGGTGTTGACCGTATCGGACACCCTGCCCCTGATGGTCGTAAGACTGAGGTAGGTTCAGCACTGGTTACACGTGAGTACTTGGGGCCGGGCAGCTTCCGCTGTAAGTTGCGCTCTCCGTACCGGAAAGGTGCAGCGACAGCCTTGTGGACATTCCACTACGAGGAAATCTACGAGAACGACCCACGTTGGCAGAGCTTCTTGGACGAGGGCTTACACGCTCAAGGTAATGAGGACGATGGTTACTACATTGTACGTAACCACGAGATTGACATCGAGTACCCAACCGCATTGAAAGATGCTGTGGATATGGAGGATGTATCGGCTGATAAAGCGCGTCTGAACACTTGGGAGGGTGAGCTGCGTACTTGGGATTTACCAGAGAGTGACCCGAACTACTTCTCTGAATACACTGACTTCTTCGAGAAGTGGGTGGATGAGGCGTTGAGTGACGGTAAGTGGCACGAGATTCGTTTCGACTGGCATACTGGCGAACAGAACCCACCAGCAGGGAAACCTGCGAAACGTGTGGACTTCTACGTTGACGGTGTGTTGAAATGGACTAACACCACGCACATCCCTGACATTCCGGGTCGTCTATGGATTGCCCTTTGGTATCCACGCGCACCGGGCAACCGTTGGGCTGGACATAGTGCCGACTACATTTATGACTCGATTGACGTTGACTACTTCCACTACATCCCGTTCCCAGATGAACCAGTGCGCCAGTTAGGTGAAACATACCCTGCTGACGTATGGCGAGACTGGAAGTGGGAGAACTTCTTCTCCGGTTTCTATAACGAGCTGCCACCGCCGTATGAGCTACCTAAGCCATATGATGATGACATGCCGAAAGATGCCGATGGAACGTGGTTGCCAACGTCGTATCTAGCCGCTGGTAAGAACCCACCACAGTACATCACACCGTACCGATTGGAATGGCGTAATGACCGCAAGTTGCAAGGCTCAGGAAATGGTGAATTCCAGTTCTTGAACTTAGTGCAAGGCGCTCGTTACAAGATGACAATCAAGGTGGCACGTACTACAACGCAAGCCGCTGGTTTGCAGTTGGTGACGTTCGAGCCGGGCAATGATGTAATCGACATCCCAATGTTCGAGGGCGATACCTATGAGTTGACTTTCATTGCACAGAGTCAACAACGAGTATCCCTGCGTCGTAACACAACAAACAATAAATACGAGGGTCTGACTGACATCCGGTTAGAGCGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7e144b02b0f55957416f66dc005750888ae74b1081bf5f1dac2b4beb715fb579
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2910
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_VpaP_KF1 Yu,J., Kwak,S.-J., Lim,J.-A. and Chang,H.-J. 2005-02 — GenBank