Protein

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Genbank accession
QYC51789.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDCKNYVSEEDIKALKESELHIEHVARSRNLAGEKVLSVTDTIRGEKVTNRTLDGLEDLYQDALSNIGYQQMGDFEQGINITGRNQIVFENGSWYIYRGDLPHVTTGASLAEDGGVWSEENPNGQWVNVGQAGIKEELASSNGANMIGYKLPHDLSILRKLSVKIDERVSLLDFGLIGDGIADDSNAIQKALDYCYEKKVGLTGKYGLKSKVTKTIYLPPFEDRFKMVDLDFCGLMLLPTSEVKKVFISGKKSGNDWVSSMEDPIMSQNISNLTVRNLIINNDDVNDSYGRVAFGFKELHINCKTENLISRNFELGFDFNNCFYLHSLNNIVLNSEPLLKTSTGHKYRNGCNLMKIEAAIALNTKDGYVFEAGVTGVVLDKMSFEGQGVSIISKGEIFDMTIQNSYLENVGDDRDICFDFQSYSHVTFSNNYMWAKRAKHLVKHKPLQPRNMIEIQKNNFIYELPVENYFIDKGLHYSEIHLKNTQASPDLSNTLFRMKDMGQGVILHKNAINLDGLGRPTHISTVVNEFIPGNYSGKYDNGYKSESMYGLYDPVKDTVNGSCEFKTKILYSDTQLLKLGIKIADVNNVKEYTGLIWGNKCYKPDGAIDDRVLITSNDEFVVIKITGISKGNFNILGGQARIL
Physico‐chemical
properties
protein length:644 AA
molecular weight: 72222,03830 Da
isoelectric point:5,63999
aromaticity:0,09317
hydropathy:-0,34596

Domains

Domains [InterPro]
DC_1596
STR
7–361
DC_1596 DC_1305
G3DSA:2.10.10.80
ATT
70–129
G3DSA:2.10.10.80 IPR012334
IPR011050
STR
173–434
IPR011050
QYC51789.1
1 644
Architecture
STR
ATT
STR
RBD
STR 7-69 | ATT 70-129 | STR 130-549 | RBD 550-644
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC51789.1
1 644
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,9938
Central domain 187 499 314 0,9638
C-terminal 500 644 144 0,9788
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-499
C-terminal
500-644

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage vB_PmiS_PM-CJR
[NCBI] 		2863189 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Proteus sp.
[NCBI] 		229037 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC51789.1 [NCBI]
Genbank nucleotide accession
MZ643249.1 [NCBI]
CDS location
range 32582 -> 34516
strand -
CDS
ATGAGTGATTGCAAAAATTACGTATCAGAAGAAGATATTAAAGCGTTGAAAGAGAGTGAACTTCATATTGAGCATGTTGCGCGTTCTCGAAATTTAGCGGGTGAGAAAGTTTTATCTGTTACTGACACCATCAGAGGTGAGAAAGTAACCAATAGAACATTGGATGGTTTAGAAGATCTGTACCAAGATGCTCTATCAAATATTGGTTATCAGCAAATGGGAGACTTTGAACAGGGTATCAACATTACCGGTCGTAATCAAATCGTGTTTGAGAATGGTTCTTGGTACATTTATCGCGGTGATTTACCACATGTTACGACGGGTGCATCGCTTGCTGAAGATGGTGGTGTTTGGTCAGAAGAAAACCCTAATGGACAATGGGTGAATGTAGGACAAGCAGGAATAAAAGAAGAATTAGCATCATCAAACGGAGCCAATATGATCGGTTATAAGTTACCTCATGATTTATCTATTCTTAGAAAACTAAGTGTTAAGATTGATGAAAGGGTATCATTATTAGATTTTGGTCTGATCGGTGACGGAATTGCAGATGATTCTAATGCAATTCAAAAAGCATTAGATTATTGTTATGAGAAAAAAGTAGGACTGACAGGTAAATACGGGTTGAAATCAAAGGTAACAAAAACAATTTACCTCCCTCCATTTGAAGATAGATTTAAAATGGTTGATTTAGACTTTTGTGGTTTAATGTTACTACCAACATCCGAAGTGAAAAAAGTATTCATATCAGGTAAAAAATCCGGTAATGATTGGGTTTCAAGCATGGAAGATCCAATCATGTCTCAAAATATTAGTAACCTTACAGTAAGAAATTTAATCATCAATAACGATGACGTTAATGATTCATACGGAAGGGTAGCATTTGGATTTAAAGAACTACATATTAACTGTAAAACAGAAAATTTAATTTCAAGAAACTTTGAATTAGGGTTTGATTTTAATAACTGTTTTTACTTGCACTCGTTAAATAACATCGTATTAAACTCTGAACCTTTATTAAAAACATCTACTGGTCATAAGTATCGAAACGGATGTAATTTAATGAAGATAGAAGCGGCAATAGCTTTAAACACAAAAGATGGGTATGTTTTTGAAGCAGGAGTCACGGGTGTTGTTTTAGATAAAATGTCTTTTGAGGGTCAAGGAGTATCTATCATATCAAAAGGTGAAATTTTTGATATGACAATCCAAAATAGTTATTTAGAAAACGTCGGTGATGATAGAGATATTTGCTTTGATTTCCAGTCATACTCACACGTAACCTTTTCAAATAATTATATGTGGGCGAAAAGAGCTAAACATTTAGTTAAACACAAACCGTTACAACCAAGAAATATGATTGAGATTCAAAAAAACAACTTCATATATGAATTACCTGTTGAAAACTATTTCATTGATAAAGGGTTGCATTATAGTGAAATACATTTGAAAAACACTCAAGCATCACCAGACCTTTCAAACACTCTTTTTAGAATGAAAGATATGGGTCAAGGGGTGATATTACATAAAAATGCTATTAATTTAGACGGTCTAGGTAGACCCACACATATATCAACAGTTGTAAATGAATTCATACCAGGTAATTATAGTGGTAAGTATGATAATGGTTATAAATCAGAATCGATGTACGGTCTTTATGATCCTGTAAAAGATACCGTCAATGGTTCATGTGAATTTAAAACAAAAATACTTTACTCAGATACTCAACTATTAAAGTTAGGTATTAAAATAGCAGATGTGAATAACGTCAAAGAGTACACCGGTTTAATATGGGGTAATAAATGTTATAAACCAGATGGGGCAATTGACGATAGAGTATTGATTACTTCTAATGACGAGTTTGTAGTAATTAAGATAACAGGCATATCTAAAGGTAACTTCAATATACTTGGTGGTCAGGCAAGGATACTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
23366c723e4bb37e00b989b4f8a225e3246203da0fbaa515ccb37f516c73ad86
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Phage-Derived Depolymerase with Activity against Proteus mirabilis Biofilms Rice,C.J., Kelly,S.A., O'Brien,S.C., Melaugh,E.M., Ganacias,J.C.B., Chai,Z.H., Gilmore,B.F. and Skvortsov,T. 2021 — GenBank