Protein

View in Explore
Genbank accession
XPK42236.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALYPIKSLGAVGVIADQAPTDLAPNAFTNAINARFVEQRVFKTGGNAPLSYVDEDKDLTPLSFVSMPFDYYSAGNSFLVVGTNKKLYKLTDESLTDISRKVATVTKKASASIKIYPVVSQIVPKESTISMNFNQTKNLEVSLLPADANNTDLVWEVSNSTYGSIAVDPNDSKLATLTSFEREGNLVVTISTADDSVVAQIAVNIIDGDSGIFLSQDTVTIRKGGTTTLTAVTGKTPVTWSSSNASIVSVTPNANSLTAVITANGEGNVTITADNGTKTASCEVVSIPQIDSISLSQSDVIVSRGSQYILTATLSPADAPNQNITWTSSNPNIATVSGTSTQGTINALLAGFTEITATTEEGNRVAVCTVRVDLAGRAMRTSAMAFAAPASEPIESQEEEVVTSPESEETVYFADPVSGIDTSGMYEGNNFYDYSNVNDIEGFARASLLETPLSSVTLDVVSASLDVGEEIVITATASPEGEYSYQWSVDKTGYVSTTSVTGKSIKLVALRKGEINVTCTVSQMTQKDYDAFDDYPWYHAVISNCAVATTHYETPQVKEFESEYFVDLPGWGEQTVVDSDGNPSVKKFNWKCERVRSFNNRLFALNMREANASGVTTNYPLRLRWSNFANENKAPTLWDDFAYDRVVSSDLASNIVGQTQALENGYAGYIDLADSNGSLIDILPLKDYLFVYTEFETYIGSPTNNTYQPLMFKKLFNDSGILAPECVVEVEGSHFVVTQNDVILHNGATKKSIASNRVKNMLINEICLVNPLATRVHLHQDKKEVWILYVGPGEPKESFACTKAAVWNYEFDTWSFRTIPYAQCIGLVDPPVLERGPIWSDFQEITWDDQSIKELVWRKDATNFRQRVTIVGSFLRGFYQVDVGALDYFYDRLNDKIIEKPLEMRLERTGIDFDNITNEWNQKHINRFRPQTTGSGTYTFEAGGSQFSNEYGHPHTSKTYTIGVDRHVSVRLNHPYLFYNVIDNDVNSNAAINGLTIEFAVGGRR
Physico‐chemical
properties
protein length:1005 AA
molecular weight: 110323,74960 Da
isoelectric point:4,71374
aromaticity:0,09552
hydropathy:-0,21224

Domains

Domains [InterPro]
DC_0191
STR
12–1005
DC_0191
G3DSA:2.60.40.1080
STR
117–205
G3DSA:2.60.40.1080 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080 IPR003343
IPR003343
STR
118–202
IPR003343 IPR003343 IPR008964
IPR008964
RBD
210–284
IPR008964 IPR003343
IPR003343
STR
214–284
IPR003343 IPR003343
XPK42236.1
1 1005
Architecture
STR
STR 12-1005
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42236.1
1 1005
Domain Start End Length (AA) Confidence
N-terminal 1 865 865 0,8756
Central domain 866 994 130 0,1939
C-terminal 995 1005 10 0,9897
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-865
Central
866-994
C-terminal
995-1005

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage ManiMatter_Bas94
[NCBI] 		3398424 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42236.1 [NCBI]
Genbank nucleotide accession
PQ850617.1 [NCBI]
CDS location
range 14155 -> 17172
strand +
CDS
ATGGCGCTGTATCCAATAAAGTCACTAGGTGCTGTAGGCGTTATCGCTGATCAGGCTCCGACAGACTTAGCTCCTAATGCTTTCACTAATGCTATAAATGCTCGATTTGTTGAGCAGAGAGTGTTTAAGACGGGGGGCAATGCCCCTCTTTCTTATGTAGATGAAGATAAGGATTTAACCCCTCTGTCTTTCGTGTCTATGCCTTTCGATTATTATAGCGCAGGTAATAGCTTTCTTGTTGTAGGTACGAATAAGAAGTTATATAAACTGACAGATGAAAGCTTGACTGACATTAGCCGTAAGGTTGCTACAGTCACTAAGAAGGCTTCTGCCTCAATTAAGATCTATCCAGTTGTTTCTCAAATCGTTCCTAAAGAATCAACTATTTCAATGAACTTCAATCAGACTAAGAATCTAGAAGTTTCTCTTCTTCCTGCTGATGCTAACAATACCGACCTTGTTTGGGAGGTTAGTAATTCAACCTATGGAAGTATTGCAGTAGACCCTAATGATTCTAAACTTGCTACTCTAACATCTTTTGAGAGAGAGGGGAATCTTGTAGTAACCATCTCTACTGCTGATGATTCTGTAGTGGCTCAGATTGCTGTGAACATTATAGATGGTGATTCGGGAATCTTCTTGAGTCAGGACACTGTTACTATCCGTAAAGGAGGGACTACCACTCTTACGGCTGTTACTGGTAAAACCCCTGTTACTTGGTCTAGCAGTAATGCTTCTATTGTATCCGTAACCCCTAACGCTAATTCTCTAACTGCTGTTATTACTGCTAATGGTGAGGGCAACGTAACAATCACTGCCGATAATGGAACGAAGACTGCTTCTTGTGAGGTTGTTTCTATACCTCAGATTGATAGCATCTCTTTAAGCCAGTCGGATGTTATTGTAAGCAGAGGTTCTCAGTACATCTTAACTGCTACCCTTTCTCCTGCTGATGCCCCTAATCAAAACATTACTTGGACCTCTTCTAATCCAAATATTGCAACAGTATCAGGGACTAGTACACAAGGGACGATCAATGCCTTACTTGCTGGATTTACTGAGATTACGGCTACCACTGAAGAAGGTAACAGAGTTGCTGTCTGTACTGTACGAGTAGATTTAGCTGGAAGGGCGATGAGAACAAGTGCTATGGCATTTGCTGCACCTGCATCAGAACCAATTGAATCACAAGAGGAAGAAGTAGTAACTTCTCCTGAAAGTGAAGAGACGGTTTATTTTGCTGATCCTGTGTCTGGTATCGATACGTCAGGGATGTATGAAGGTAATAACTTCTACGACTACTCTAACGTGAACGACATTGAAGGTTTTGCAAGAGCTTCTTTACTAGAAACCCCTTTGTCATCCGTAACCTTGGATGTTGTCAGTGCTTCTCTTGATGTTGGTGAGGAAATAGTTATTACAGCTACAGCTTCTCCAGAAGGTGAGTATTCCTATCAGTGGTCTGTCGATAAGACTGGTTATGTTTCTACAACTTCAGTTACTGGTAAATCTATCAAACTGGTTGCTCTTCGTAAAGGAGAGATTAACGTAACATGTACTGTCAGTCAGATGACTCAGAAAGATTACGATGCTTTTGATGATTACCCTTGGTATCACGCTGTTATCTCTAACTGTGCAGTTGCTACAACTCACTATGAAACTCCTCAGGTAAAAGAGTTCGAATCAGAATACTTTGTAGACCTTCCGGGGTGGGGTGAGCAAACAGTTGTTGATAGTGATGGAAACCCTTCAGTCAAAAAGTTTAACTGGAAATGTGAGAGAGTAAGATCTTTTAACAACCGTCTTTTTGCTCTGAATATGAGAGAGGCTAATGCTTCTGGTGTTACCACTAACTACCCTCTTCGTCTTCGTTGGTCTAATTTTGCCAACGAGAACAAAGCTCCTACTTTATGGGATGACTTTGCCTATGATCGAGTTGTGTCTTCGGACTTGGCTTCTAACATCGTAGGACAGACTCAGGCTTTAGAAAATGGATATGCTGGTTACATCGACTTAGCTGACTCTAACGGCAGCTTGATTGATATCCTACCTCTTAAAGATTACTTGTTCGTTTATACAGAGTTTGAAACGTACATTGGTTCTCCAACTAATAACACGTACCAACCTCTGATGTTCAAGAAACTCTTTAACGATTCCGGTATCCTTGCTCCTGAGTGTGTAGTAGAAGTTGAAGGTAGTCATTTCGTAGTTACTCAGAACGATGTAATCTTACACAATGGTGCAACTAAGAAGTCAATCGCTTCTAACCGTGTTAAGAATATGCTAATTAATGAAATATGTCTGGTTAACCCTTTAGCTACTCGAGTACATTTGCATCAGGATAAGAAAGAAGTTTGGATTCTGTACGTAGGTCCGGGAGAACCAAAAGAAAGCTTCGCTTGTACTAAAGCTGCTGTATGGAACTACGAGTTTGATACTTGGTCCTTCCGTACTATTCCTTATGCTCAGTGTATCGGTCTAGTTGACCCTCCTGTTTTAGAGAGAGGTCCAATCTGGTCTGACTTCCAAGAGATCACTTGGGATGACCAATCTATCAAAGAACTCGTTTGGAGAAAGGATGCAACAAACTTTAGACAGAGGGTTACGATAGTAGGTTCGTTCTTGAGGGGGTTCTATCAAGTGGATGTAGGTGCTCTTGATTATTTCTATGATAGGCTTAATGATAAGATTATAGAAAAACCACTGGAGATGAGGTTAGAGAGAACTGGCATTGATTTTGATAACATCACTAATGAGTGGAATCAAAAGCATATCAATAGGTTCAGACCTCAGACGACAGGTTCTGGTACGTATACTTTTGAGGCGGGTGGTAGTCAATTCTCTAACGAGTATGGTCATCCACATACATCCAAGACGTATACGATTGGTGTTGATAGGCATGTCTCGGTGAGACTGAACCATCCATACCTTTTCTATAATGTTATAGATAATGATGTTAACAGCAATGCTGCTATCAATGGATTAACGATAGAGTTTGCTGTTGGCGGGCGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
668372c683c2fe23a81418b0723a10513b9c059cb56c3a61843fa041f6bf47ca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7757
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank