Protein

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Genbank accession
AZV01474.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAANNLSDVVSVEEARQNLNILSSDEVNTLIQNHINDKNNPHNTNKIQVDVSNIQYWTYSNSYSEDADKYATAKAVNALYRAIQNSYPIGTIHLSVNPANPSTYLLCGGTWELVSKGRALVGYDSDTRPVETNFGSASVALSQNNIPSHTHSVLLTGGGHTHGNSASASSFDHGNKTTSVFDYGTKSTSDFDYGTKYTSTFDYGSRNTNNSGNHTHQALVQNVGGRGVNAITATADAGVGNASQPTYGAGDHSHVVTIGDVTSGASGDHSHTVGIGAHSHTVGIGSHTHSGTVTVQSSEHTHSGTTGASGGGQAFSVEQPSYVVYVWKRVA
Physico‐chemical
properties
protein length:331 AA
molecular weight: 34783,96970 Da
isoelectric point:6,08691
aromaticity:0,07251
hydropathy:-0,48489

Domains

Domains [InterPro]
DC_0782
STR
1–331
DC_0782
IPR053827
ATT
84–330
IPR053827
IPR051934
Unmapped
188–299
IPR051934
AZV01474.1
1 331
Architecture
STR
ATT
STR 1-83 | ATT 84-331
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SflM_004
[NCBI] 		2500763 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZV01474.1 [NCBI]
Genbank nucleotide accession
MK295205 [NCBI]
CDS location
range 59486 -> 60481
strand -
CDS
ATGGCTGCTAATAACTTGTCAGACGTGGTTAGTGTTGAAGAGGCTAGGCAGAACCTTAATATTCTATCAAGTGATGAAGTTAATACTCTTATTCAGAACCACATCAATGATAAGAACAACCCTCACAATACTAACAAGATTCAGGTAGATGTCTCCAATATTCAATACTGGACTTATTCAAACTCTTACTCTGAAGATGCTGATAAGTATGCTACTGCAAAAGCTGTGAATGCTCTTTATAGAGCTATCCAGAATAGTTACCCAATTGGTACTATCCATTTGTCAGTTAACCCTGCAAACCCATCTACATATTTACTTTGTGGTGGTACTTGGGAACTTGTCTCTAAAGGTAGAGCATTAGTTGGTTATGATTCTGACACAAGACCAGTTGAAACTAATTTTGGTAGTGCATCTGTAGCACTTTCTCAAAATAACATTCCAAGTCACACACACTCTGTATTGTTAACTGGTGGTGGACACACGCATGGTAATAGTGCGTCAGCTTCAAGTTTCGACCACGGAAATAAGACAACGAGTGTGTTTGATTATGGTACAAAATCTACAAGTGACTTTGACTATGGAACTAAGTATACCAGTACTTTTGACTATGGTTCAAGGAATACAAACAACTCTGGCAATCACACTCACCAAGCTCTTGTACAGAACGTTGGTGGACGTGGTGTGAATGCTATTACGGCAACGGCTGATGCAGGTGTTGGTAATGCGTCACAACCAACTTATGGGGCAGGTGACCACTCTCACGTTGTGACGATTGGAGATGTTACATCTGGTGCATCCGGTGACCACAGCCACACAGTCGGTATTGGTGCTCACAGCCACACAGTCGGTATTGGTTCACATACACACAGTGGTACTGTGACAGTTCAATCTTCTGAGCACACTCACTCAGGTACAACTGGTGCATCTGGTGGTGGACAAGCTTTCAGTGTTGAACAACCATCTTATGTTGTTTATGTGTGGAAGAGAGTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f181e61a0eae13e741689a54ef4d9917452233cbed39f27abd8590ce8882f22
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6454
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting Shigella spp. and E. coli O157: H7 Shahin,K., Bao,H. and Wang,R. 2020-06-17 — GenBank