Protein

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Genbank accession
APU88869.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,76
Protein sequence
MALSQILISNLTTGSLSIDIKLDPKRVIRELLPLGGSVDVSAVATLDELNRNTTVRLLRGVDPVATPKISVTQVVAAGDDDIEGTTTQEVSTLVSPDNHMVLNTLTAGRTIRLNSQTTTDTASSFIGFQAKPGRGASSTENVIGGEISPRLNSAVALTGSGSIIGLHVDAYLRGSAGGDIAGDVRGMQIELVDDNAAGRTISGNAIGIRFRSNLSCTAITGQHTVLSVENGEGSQKWDQLAVIESEAGVFDDTTAVNATQNGYIAVMVNGQQRYIPLYTGHV
Physico‐chemical
properties
protein length:282 AA
molecular weight: 29444,64600 Da
isoelectric point:4,88403
aromaticity:0,03191
hydropathy:0,00496

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APU88869.1
1 282
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,1946
Central domain 116 271 157 0,2487
C-terminal 272 282 10 0,9969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-271
C-terminal
272-282

Taxonomy

  Name Taxonomy ID Lineage
Phage Virus Rctr197k
[NCBI] 		1924548 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APU88869.1 [NCBI]
Genbank nucleotide accession
KX853510 [NCBI]
CDS location
range 40144 -> 40992
strand +
CDS
ATGGCGCTCTCGCAGATCCTGATCAGCAACCTCACGACTGGCTCGCTTTCCATCGACATCAAGCTCGACCCCAAACGGGTCATCCGCGAGCTTCTGCCTCTGGGTGGCAGCGTCGACGTCTCGGCGGTCGCGACGCTCGACGAGCTCAACCGGAACACGACCGTGCGTCTGTTGCGCGGTGTGGACCCGGTGGCGACGCCGAAGATCTCGGTGACCCAGGTGGTCGCAGCCGGCGACGACGACATCGAGGGGACGACCACGCAGGAAGTCTCCACGCTGGTGTCGCCGGACAACCACATGGTCCTGAACACACTCACGGCGGGGCGGACCATTCGACTCAACAGCCAGACCACGACGGACACGGCGTCGTCGTTCATCGGATTCCAAGCGAAGCCCGGGCGTGGTGCGTCATCGACCGAGAACGTCATCGGCGGCGAGATCAGCCCGCGTCTGAACTCGGCCGTCGCATTGACCGGCTCGGGGTCGATCATCGGCCTGCACGTCGACGCGTACCTTCGGGGCAGCGCCGGTGGTGACATCGCCGGCGATGTGCGCGGCATGCAGATCGAGCTCGTCGACGACAACGCGGCGGGCCGAACGATCTCCGGCAACGCCATCGGCATCCGGTTCCGCTCGAACCTGAGCTGCACCGCGATCACTGGACAGCACACGGTGCTCTCGGTCGAGAACGGCGAAGGCTCCCAGAAGTGGGACCAGCTCGCCGTCATCGAGTCGGAAGCGGGTGTCTTCGATGACACCACCGCGGTCAACGCCACCCAGAACGGGTACATCGCTGTCATGGTGAACGGCCAGCAGCGCTACATCCCGCTCTACACCGGTCACGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
065985fb4e87d865e5c6b7f8a45f6b747c0846a68e44662e6b78cf7a79b9c9db
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5720
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture Gambelli,L., Cremers,G., Mesman,R., Guerrero,S., Dutilh,B.E., Jetten,M.S., Op den Camp,H.J. and van Niftrik,L. 2016 27877158 GenBank