Protein

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Genbank accession
QPZ53611.1 [GenBank]
Protein name
putative tail tubular B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGRVAVQLTNFTGGELSPRLDGRNDLNKYNSGCKTLENMIIYPHGSAARRSGTQFVAEVKDSTKKTRLIAFEFSTVQTYILEFGDQYIRFYKDNGQILSGGSAYEISSPYLEAELFDIKFAQSADTMYICHPNHHPRKLTRSGHTNWTLVDDVIINGPFMDHNVETTTLQASHKVVGATTTVTASSTTGINANQGFLSTDVGRLLHISSGHLKITSVTSTTVVVGIVIKDLSTVLATTDFALGSFSDTTGYPSCVTFFEQRLVFAATKAQPQAIFFSRSADYENFDDQYHETVSDDDAIVYTIASNQVNAIRFLTATRTLIIGTAGGEFAVDGGGTGQAITPTNILINKQSNHGSANVDGIAVGNATLFLQRAKRKIRELAYNFDVDGYVAPDLTILAEHITETGITQMAYQEEPNSIIWCVRTDGQLLGFTYQREQQVTAWHRHIFGGAFGSGNAVCESVEVLPTDSSEYQVWVIVKRTINGATKRYVEYLHNLDFDETDDTSFNYLDSQLAYNGSATTTISGLDHLEGQTVSVLADGATHPDKVVSSGGITLERSSTKVKVGLGYTSLLQTMRIDAGGDNGTSQSKTKRIYEITARLYESIGIEIGPDLANMERIPFRSSANPMDSGVNVFTGDKDIEFRGNYETDGFIFVRQTQPLPLTVLSLYPRLITNDG
Physico‐chemical
properties
protein length:675 AA
molecular weight: 73900,59880 Da
isoelectric point:5,26348
aromaticity:0,09185
hydropathy:-0,21526

Domains

Domains [InterPro]
DC_0058
STR
1–240
DC_0058 IPR058003
DC_0058
STR
234–669
DC_0058
QPZ53611.1
1 675
Architecture
STR
STR 1-669 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53611.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 157 157 0,9942
Central domain 158 358 202 0,0341
C-terminal 359 675 316 0,2474
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-157
Central
158-358
C-terminal
359-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC100P
[NCBI] 		2796522 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53611.1 [NCBI]
Genbank nucleotide accession
MW273924 [NCBI]
CDS location
range 24433 -> 26460
strand -
CDS
ATGGGGAGAGTTGCTGTTCAATTAACCAATTTTACTGGTGGAGAATTATCACCAAGACTAGATGGTAGAAATGATTTAAACAAATATAACTCTGGATGCAAAACTTTAGAGAACATGATTATCTACCCACATGGTAGTGCTGCAAGAAGATCTGGTACACAGTTTGTTGCAGAAGTAAAAGATAGTACAAAAAAAACTAGATTAATTGCTTTTGAATTTTCAACAGTACAAACTTACATTCTTGAGTTTGGAGATCAGTACATTAGATTTTATAAAGACAATGGTCAGATATTATCTGGTGGTTCAGCTTATGAAATTAGTTCACCTTATTTAGAAGCAGAACTATTTGATATTAAGTTTGCTCAATCTGCAGATACTATGTATATCTGTCATCCAAATCACCATCCTAGAAAACTAACCAGATCTGGTCATACTAACTGGACATTAGTTGATGACGTTATAATTAATGGACCATTCATGGATCACAATGTAGAAACAACTACATTACAAGCATCACACAAAGTAGTTGGTGCAACAACAACTGTAACAGCTTCATCAACAACAGGTATTAATGCTAATCAAGGTTTTTTATCTACAGATGTTGGAAGATTACTTCATATAAGTAGTGGTCATTTAAAAATAACTTCAGTTACATCTACAACTGTAGTTGTTGGAATTGTTATTAAAGATTTAAGTACAGTTCTTGCTACAACAGATTTTGCATTAGGATCATTTTCAGATACTACAGGTTATCCATCTTGTGTTACTTTCTTTGAACAACGATTAGTATTTGCTGCAACTAAGGCTCAACCACAAGCTATATTTTTTTCAAGATCAGCAGACTATGAAAACTTTGACGATCAATATCATGAAACAGTATCTGATGATGATGCTATAGTTTATACGATTGCGTCAAACCAAGTTAATGCAATTAGATTTTTAACAGCAACTAGAACATTGATTATAGGTACTGCAGGTGGTGAATTTGCAGTTGATGGTGGTGGTACGGGTCAAGCAATCACACCAACAAATATTCTAATTAACAAACAATCAAATCATGGTTCAGCAAATGTAGATGGTATTGCAGTAGGTAATGCTACTTTGTTTTTACAACGTGCTAAAAGAAAAATAAGAGAACTAGCTTATAACTTTGATGTTGATGGTTATGTTGCTCCAGACTTAACTATTCTTGCAGAACATATTACTGAAACTGGTATTACACAAATGGCATATCAAGAAGAACCTAATAGTATTATTTGGTGTGTTAGAACTGATGGTCAACTTTTAGGATTTACTTATCAAAGAGAACAACAAGTAACTGCTTGGCACAGACATATATTTGGTGGTGCATTTGGAAGTGGTAATGCAGTTTGTGAAAGTGTTGAAGTCTTACCAACAGATAGTTCAGAGTATCAAGTTTGGGTTATTGTAAAAAGAACTATTAATGGTGCAACAAAAAGATATGTAGAATATTTACATAACTTAGACTTTGATGAAACAGATGATACATCATTTAATTATTTAGATTCTCAATTAGCTTACAATGGATCTGCAACAACAACTATATCTGGTTTAGATCATCTTGAGGGTCAGACAGTATCTGTACTTGCAGATGGTGCAACACATCCAGACAAGGTTGTAAGTTCTGGTGGTATTACACTTGAGAGATCATCAACAAAAGTAAAAGTTGGATTAGGTTATACATCTTTATTACAAACAATGAGAATAGATGCTGGTGGAGATAATGGTACATCACAATCTAAAACAAAAAGAATTTATGAAATTACTGCTAGACTTTATGAAAGTATTGGTATTGAGATTGGTCCAGATCTAGCCAATATGGAAAGAATACCATTTAGATCTTCAGCTAATCCTATGGATAGTGGTGTTAATGTATTTACAGGAGATAAAGATATTGAGTTTAGAGGTAACTATGAAACAGATGGTTTTATATTTGTGAGACAAACACAACCATTACCATTAACTGTATTGTCGTTATACCCTAGACTTATTACAAATGATGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
064eb95d53f1d2a50a398109290b1906f7ee4404898819d0b51276e430585428
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9398
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank