Protein

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Genbank accession

YP_011898313.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence UniProt/TrEMBL

Probability 1,00

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,55

Evidence RBPdetect2

Probability 0,95

Protein sequence

MDNIRIAILSANNTPVAFMDNQHKKSMHYWGDELHEYLQGAANTYTFTVSAKHQDAENVTAGNKVAFIRKGKSYYLNIVNTEQTEQTITATAWSLSFELINEDAGEYKAGKAMSFEEYLAVFDAERTLKLGLNEVSDKRITNEWTGTTSVLKRLFSLANVFSAEIEFETVLNSDYSLKEIVLNVYRKHSDTDSGVGEYRNDIVLRYGKGITGIRKTTDAEKLYTCIQPTGKDGLTINGLDKKEYDENGNIEYFTDGAIIRAPQARDRFPSNIVNKADAYILMRKEYDTDSKDKLYSMALSDLKTASEPVVTYEVDGYFDTNIGDTVRMQDQEWTPVLYLQARVSEQIRSLTNPKTAKTVFTNYKELTSEISDSLLQRMQDLINKNKVYTCSISTNNGIIFKNGIGSTTLTAYAYDNGVDVTGNLEIRWSKDGTEFYVGKSVTVNATDVDTKAVYSFEAMENGIKRGYYEVTIADLMDGEDGKDGEQGPQGEKGEQGEQGPPGPQGAPGLDGIQGPKGDQGIPGKDGKDGKTQYTHIAYANSADGRTDFSVSDSNREYIGMYVDFAQNDSADPTKYAWSKIKGTDGAIGTPGKPGADGKTPYLHIAYANSADGKTGFSTTDGTNKLYIGQYTDYTQADSTDATKYTWTKIKGEQGERGLQGLQGEKGEQGIPGTAGANGKTSYFHIKYSSVAKPTTFSQMTETPSAYIGTYVDFVQEDSTDPARYTWSQFKGSQGVKGDQGIAGKNGADGKTSYLHIAYANSADGKTGFDVSNSAGKFYIGQYTDFTQADSTDPTKYAWTKIKGENGKDGTNSRSYILEASDTAIKKGADGALTPSKITFRSFYRDGDSATRIPYNGRFKIEESTNGTSYSVKYTSSANESAKEYTPTATAKILRCTLYSADVTINALDTQSVVVLTDVDNLEIGGRNLLLNTGFNTFNHWIKGSNTKSLQMVNGWCEVTIGGTWSGFVQEFIPEKNVEYIVSYEAYLVDTVAETALLETDFGTPDQNQTINKTPAKYSLKLKYPSTSLNGKIDFMLSNNEVGKKWRIRNIKLEKGNKATDWSPAPEDIETLVVTLSNDSQTVATDTNGNGGNFIDCSTKVQVYNGAQDVSKVATYTVTKSSGIAGTWDLSTRTYKVSALSTDNGWVDIKVTYNGNSITRRFTVSKSKQGAQGATGPQGDNGPQGPAGTSGRGIKTITEYYLISSAKTGITTASSGWSTSVPTMTATNKYLWNYEKFTFTDNTTATTTPKIIGIYGDKGATGATGPQGPQGNAGATGPQGPQGATGPKGPQGATGATGPQGVTGNGIKSITNYYLATASGSGVSASTSGWTTTVQAITASKKYLWNYEVVTYTNGSTYQSAPCIIGVYGDNGATGATGPSGIIVSSAAPVNPEVGQLWQTASGQPIKRWDGSKWVIHYISVDNLNAQTLSAIAADLGTVTAGLIKDKNGTMLIDVTSGKIISKKIVQGAVENVASLSNAYLAFSGKAPTTDRATMSVNLQNIMFTNENTGKATTIQFEDEMIYARNSVSPRISIYAYRNYDSGTVKGPYTSANSNNNIRVELKRRGCMVTCKITMLAQFPGSGEYGPFNEVKIPVGYRPVVDFFAPYSEVSGPNIFGTGRYGIGKDGGIKIYVENATWTERHATFTWITDD

Physico‐chemical properties

protein length:	1650 AA
molecular weight:	178704,81040 Da
isoelectric point:	5,57701
aromaticity:	0,09818
hydropathy:	-0,52012

Domains

Domains [InterPro]

DC_0266
STR
1–614

DC_0266 G3DSA:1.20.5.320 DC_2057 G3DSA:1.20.5.320 IPR008160

IPR010572
ENZ
139–365

IPR010572 IPR008160 DC_1151 DC_1906 DC_1328

IPR050149
Unmapped
477–803

IPR050149

G3DSA:1.20.5.320
STR
499–549

G3DSA:1.20.5.320

YP_011898313.1

1 1650

Architecture

STR

STR 1-614 | STR 651-803 | STR 859-1610 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0266	STR	DC_0266	1	614	Novel HMM	DC_0266	Central	Low	Positional only	76 proteins / 76 hits
IPR010572	ENZ	DC_0675	139	365	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR008160	STR	DC_0536	477	530	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR050149	Unmapped	-	477	803	InterPro	Collagen superfamily	-	-	-	-
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	499	549	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	651	704	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1151	STR	DC_1151	651	803	Novel HMM	DC_1151	Central	Low	Positional only	27 proteins / 27 hits
DC_2057	STR	DC_2057	859	1108	Novel HMM	DC_2057	Central	Low	Positional only	53 proteins / 53 hits
DC_1906	STR	DC_1906	1069	1254	Novel HMM	DC_1906	Central	Low	Positional only	7 proteins / 7 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	1165	1215	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR008160	STR	DC_0536	1255	1303	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1328	STR	DC_1328	1282	1610	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_011898313.1

1 1650

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	932	932	0,9466
Central domain	933	1530	599	0,3510
C-terminal	1531	1650	119	0,9736

Note: Constraints were applied during segmentation.
Fixed 24 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-932

Central
933-1530

C-terminal
1531-1650

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Ruminococcus phage phiRg507T2_2 [NCBI]	2772517	Uroviricota > Caudoviricetes > Munstervirinae > Ahaonvirus 507T22 >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_011898313.1 [NCBI]

Genbank nucleotide accession

NC_104262.1 [NCBI]

CDS location

range 13599 -> 18551
strand +

CDS

GTGGATAACATCAGGATCGCGATTTTAAGCGCGAATAACACACCAGTAGCGTTTATGGACAATCAGCACAAGAAGTCCATGCACTACTGGGGAGATGAATTGCACGAATACTTACAGGGTGCGGCAAATACTTACACCTTTACGGTGTCCGCAAAGCATCAGGATGCAGAGAATGTTACCGCCGGGAATAAGGTGGCGTTTATACGCAAAGGGAAATCCTACTATCTAAACATCGTAAACACTGAGCAGACAGAGCAGACGATTACTGCCACGGCGTGGTCACTGTCGTTTGAGTTAATCAATGAGGATGCCGGCGAATACAAAGCTGGAAAAGCAATGAGCTTTGAGGAGTACCTTGCCGTATTTGACGCGGAGAGGACACTTAAATTGGGTCTCAACGAGGTGTCAGATAAGCGGATCACCAACGAATGGACAGGTACAACGTCCGTATTAAAGAGATTATTCTCCCTGGCTAATGTATTTTCTGCGGAGATCGAGTTTGAGACAGTGCTTAACAGCGATTACTCCTTAAAAGAGATTGTGCTGAATGTATATCGGAAACACTCCGATACAGACAGCGGAGTCGGAGAATACCGGAATGACATTGTACTGCGGTACGGGAAAGGAATTACCGGAATTCGAAAAACCACAGATGCCGAGAAGCTTTACACCTGCATCCAGCCGACCGGGAAAGACGGGCTGACGATCAATGGACTGGACAAAAAAGAATACGATGAGAACGGGAATATCGAGTACTTTACAGACGGCGCAATCATCCGGGCACCACAGGCAAGAGACCGGTTCCCATCCAACATCGTAAATAAGGCTGATGCTTATATCCTGATGCGTAAAGAGTACGATACAGACAGCAAGGACAAGCTCTATAGCATGGCTCTGTCTGATCTTAAAACAGCATCTGAACCGGTGGTGACTTACGAGGTGGACGGATATTTTGACACCAACATCGGGGATACGGTAAGGATGCAGGATCAGGAGTGGACACCAGTCCTTTATCTACAGGCAAGAGTATCAGAACAGATCAGGAGTCTTACCAATCCCAAAACTGCAAAGACGGTATTTACAAACTACAAAGAGCTGACATCGGAAATTTCGGACAGCTTATTACAGAGGATGCAAGACCTTATTAATAAAAATAAGGTTTATACTTGTTCCATCTCCACCAACAATGGCATCATCTTTAAAAATGGTATCGGCAGCACTACTCTGACAGCTTACGCTTACGATAACGGCGTGGACGTCACGGGCAATCTGGAAATCCGGTGGAGTAAAGATGGGACAGAGTTTTACGTTGGCAAGAGTGTTACGGTAAATGCTACGGACGTGGATACAAAGGCGGTGTACTCGTTTGAGGCTATGGAAAATGGGATAAAACGTGGGTATTACGAGGTTACGATTGCAGATTTAATGGATGGAGAGGACGGAAAAGACGGGGAACAGGGTCCGCAAGGTGAGAAAGGAGAGCAAGGCGAACAGGGACCTCCGGGACCACAAGGCGCTCCGGGATTGGATGGTATACAGGGTCCAAAGGGGGATCAGGGAATCCCGGGAAAAGATGGGAAGGACGGAAAAACACAGTACACCCACATCGCCTATGCGAACAGCGCAGACGGTAGGACAGATTTTTCCGTGTCCGACAGTAATAGGGAATATATCGGAATGTATGTTGATTTTGCGCAAAATGACAGCGCAGACCCGACAAAATACGCATGGAGTAAGATCAAAGGCACAGACGGGGCGATCGGAACACCCGGAAAGCCGGGAGCTGATGGAAAGACCCCGTATCTACATATCGCCTACGCAAACAGTGCAGATGGCAAGACGGGATTTTCCACCACGGATGGTACAAATAAGCTCTATATCGGGCAGTACACGGATTATACACAGGCAGATAGTACAGATGCTACGAAGTATACATGGACAAAAATAAAAGGAGAACAGGGGGAACGTGGGCTACAAGGGCTGCAAGGAGAAAAAGGCGAACAGGGGATTCCTGGAACAGCTGGTGCGAATGGAAAGACCAGTTATTTCCACATCAAGTATTCTTCTGTGGCAAAGCCGACAACGTTCAGTCAGATGACAGAGACGCCGTCTGCTTATATTGGAACTTATGTGGACTTTGTACAGGAAGATTCTACAGATCCTGCAAGATATACCTGGTCGCAGTTTAAAGGATCGCAAGGCGTAAAAGGAGATCAGGGAATTGCTGGTAAGAATGGTGCAGATGGGAAAACAAGTTATTTACATATCGCCTACGCAAACAGCGCAGATGGAAAGACAGGGTTTGATGTTTCGAATAGCGCTGGGAAGTTTTATATTGGACAGTATACAGATTTCACGCAAGCGGATTCTACAGACCCGACGAAATACGCATGGACAAAAATCAAAGGCGAAAATGGAAAAGACGGAACAAACTCAAGAAGCTACATCCTGGAAGCGTCCGATACCGCTATTAAAAAAGGTGCAGACGGAGCTTTAACACCATCTAAAATAACATTCCGGTCGTTTTATCGAGATGGAGACAGTGCGACAAGGATACCATATAATGGTAGATTTAAAATCGAAGAGTCAACCAACGGAACATCATACTCCGTGAAATACACCTCATCTGCGAACGAAAGTGCAAAGGAGTATACACCGACTGCAACTGCGAAAATACTCCGTTGCACGCTTTACAGCGCAGACGTGACTATAAATGCTTTGGATACGCAGAGTGTTGTTGTGCTTACGGATGTGGATAATTTGGAGATTGGCGGTAGGAATTTACTATTAAACACAGGGTTTAATACTTTTAACCATTGGATTAAAGGTAGTAATACAAAATCTCTCCAGATGGTTAATGGATGGTGTGAAGTTACGATTGGTGGGACATGGTCTGGATTTGTTCAAGAATTTATACCAGAAAAAAATGTTGAATACATAGTGAGTTACGAAGCGTATCTGGTAGACACTGTTGCTGAAACTGCTTTGTTAGAAACAGATTTTGGTACTCCAGATCAAAATCAAACAATTAACAAAACGCCTGCAAAATATTCATTGAAATTAAAATATCCATCTACATCTTTAAATGGAAAAATAGATTTCATGTTATCAAATAATGAAGTGGGTAAAAAATGGAGAATTCGAAATATCAAACTTGAAAAGGGTAATAAAGCCACAGACTGGTCTCCCGCTCCTGAGGACATAGAAACTTTAGTAGTAACATTGTCCAACGATTCCCAAACAGTAGCAACAGACACAAACGGAAACGGTGGAAACTTTATAGATTGCTCTACAAAAGTGCAGGTTTACAACGGCGCACAGGACGTTTCAAAAGTCGCTACTTACACCGTAACAAAATCTTCCGGAATTGCTGGTACATGGGATTTAAGTACACGTACTTACAAGGTATCCGCTCTATCTACGGATAACGGATGGGTTGACATTAAAGTAACATACAACGGAAATTCTATCACAAGACGGTTTACGGTTTCGAAATCGAAACAGGGCGCGCAGGGAGCAACGGGACCTCAAGGTGATAATGGACCACAAGGGCCGGCGGGGACATCAGGAAGAGGGATAAAAACTATTACAGAATATTATTTGATTTCTTCCGCAAAAACAGGAATTACAACAGCGTCAAGCGGTTGGAGTACATCAGTTCCGACGATGACAGCAACAAATAAATACTTGTGGAACTATGAAAAATTTACGTTTACAGATAATACGACAGCGACCACTACACCAAAAATAATCGGGATATACGGAGACAAAGGAGCAACAGGAGCTACCGGTCCACAAGGACCTCAAGGGAATGCAGGTGCAACAGGTCCCCAGGGGCCACAAGGAGCGACTGGCCCGAAAGGACCGCAGGGGGCAACTGGTGCAACGGGACCACAAGGGGTAACTGGAAACGGAATAAAATCTATCACGAATTATTATCTTGCAACGGCAAGCGGAAGCGGTGTGTCGGCGTCCACATCAGGATGGACTACAACTGTACAAGCAATAACGGCGTCAAAAAAATATCTGTGGAATTATGAAGTTGTTACCTATACAAATGGTAGCACGTATCAATCAGCACCATGTATCATCGGAGTATACGGTGATAATGGAGCGACCGGTGCTACAGGGCCAAGTGGCATAATTGTATCTTCTGCGGCTCCGGTGAATCCTGAAGTTGGCCAGTTATGGCAAACAGCCTCCGGTCAGCCGATCAAGCGGTGGGATGGAAGTAAATGGGTGATCCATTATATTTCTGTTGATAACTTAAACGCACAGACTTTAAGTGCGATAGCGGCAGATCTTGGAACTGTAACAGCCGGACTTATTAAGGATAAGAATGGAACAATGCTTATCGATGTTACATCCGGAAAGATTATTAGCAAGAAAATCGTGCAAGGAGCAGTGGAAAATGTTGCGTCATTGAGTAATGCGTATTTGGCTTTCTCCGGTAAGGCTCCGACAACAGATCGAGCTACTATGAGCGTGAACTTGCAAAACATCATGTTTACAAATGAAAATACGGGAAAAGCAACGACAATCCAGTTTGAGGATGAAATGATATATGCAAGAAATTCTGTATCCCCACGTATAAGCATATATGCGTATCGCAATTACGATTCCGGTACCGTGAAAGGTCCATATACAAGTGCAAACTCCAATAATAACATCCGTGTGGAACTAAAAAGAAGAGGATGTATGGTAACATGCAAGATCACAATGCTTGCACAATTTCCGGGAAGTGGCGAATACGGGCCATTCAACGAAGTGAAAATTCCAGTAGGATATCGACCGGTTGTGGATTTCTTTGCTCCCTATAGTGAAGTTTCAGGACCTAACATATTTGGAACGGGAAGATACGGCATAGGAAAAGATGGGGGGATCAAGATTTATGTGGAGAATGCCACATGGACAGAACGTCACGCAACGTTCACGTGGATTACAGATGATTGA

Genome Context

Tertiary structure

PDB ID

ed1f18e0dccd8904ba10bd9408c716d7e315b72d56ccfbe24a6363c6da45c7f2

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7841

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Temperate bacteriophages infecting mucin-degrading bacterium Ruminococcus gnavus from the human gut	Khokhlova,E.V., Shkoporov,A.N., Draper,L.A., Kingston,A.R., Forde,A., Ross,R.P. and Hill,C.	2023-03-30	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature