Protein

View in Explore
Genbank accession
ANY92499.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MADVLEGLAPKHYHGQNQVWYENGKQYIAVNVGEDDDPVYQYREVLYRWIGNNNRWYLAYSNNPDSVGTVSLDNARYFTGAPYRGDVALFGDGLKELPDPLPFFTGSQYKLYSNGADTLENYVNFGYQGTKNPYGIDNIYRMCKLRQVDAQYLYTVTRPGQQGYNWGVGAFVGTIPTAIYPNIWSLQFRLGDFVDGQDRMWLLYGGSNVTWTEQGTGQQKSAQISFGAHVSRSGELMYYRRFNSTYVYARVQLASLSGWHQVQLTQDANHNCTITVDKGTPNEQSASCSLKLWGKQFDSVLFNCGPACVGTTGVPITDVYDKSWIGNIDIRRFYIDTHGTFNENVIPRYYEQPYLNLEIQAEGSNTWQDVSSSLVNWPHEQDNRRCIYTLPDVPDGQYFIRYKTNYGVSNTLPVRIKGDISRKTELYSDFSNLIEMRENWLVAHKQWGGTGVVGNQTALLNGGVVRENVEVYPDYSDVANAVKGVLRLRGHGTYYDGDVIGVDRIGHPAPDGRKTEVGAALVTREYLGPGSFRCKLRSPYRKGAATALWTFHYEEIYENDPRWQSFLDEGLHAQGNEDDGYYIVRNHEIDIEYPTALKDAVDMEDVSADKARLNTWEGELRTWDLPESDPNYFSEYTDFFEKWVDEALSDGKWHEIRFDWHTGEQNPPAGKPAKRVDFYVDGVLKWTNTTHIPDIPGRLWIALWYPRAPGNRWAGHSADYIYDSIDVDYFHYIPFPDEPVRQLGETYPADVWRDWKWENFFSGFYNELPPPYELPKPYDDDMPKDADGTWLPTSYLAAGKNPPQYITPYRLEWRNDRKLQGSGNGEFQFLNLVQGARYKMTIKVARTTTQAAGLQLVTFEPGNDVTDIPMFEGDTYELTFIAQSQQRVALRRNTTNNKYEGLTDIRLERI
Physico‐chemical
properties
protein length:910 AA
molecular weight: 104384,53120 Da
isoelectric point:5,08581
aromaticity:0,14066
hydropathy:-0,63593

Domains

Domains [InterPro]
DC_0211
ATT
1–428
DC_0211 cd00413 DC_0213
G3DSA:2.60.120.200
STR
461–733
G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
461–735
G3DSA:2.60.120.200
IPR013320
STR
518–727
IPR013320
ANY92499.1
1 910
Architecture
ATT
ENZ
STR
RBD
ATT 1-428 | ENZ 429-460 | STR 461-735 | RBD 736-910
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ANY92499.1
1 910
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7382
Central domain 11 209 200 0,9291
C-terminal 210 910 700 0,2177
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-910

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP46
[NCBI] 		1874016 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANY92499.1 [NCBI]
Genbank nucleotide accession
KX371614 [NCBI]
CDS location
range 36245 -> 38977
strand +
CDS
ATGGCTGATGTACTAGAGGGTTTAGCCCCTAAGCATTACCACGGTCAGAATCAGGTTTGGTACGAAAATGGCAAACAGTACATTGCAGTGAACGTCGGTGAAGACGACGACCCAGTGTACCAGTACCGCGAAGTGCTTTACCGCTGGATTGGTAACAACAACCGCTGGTACTTAGCCTATAGCAATAATCCTGACTCTGTAGGCACAGTGAGCCTTGATAACGCGCGTTACTTCACAGGTGCGCCTTATCGTGGCGACGTAGCCTTGTTTGGTGATGGTCTGAAAGAACTACCAGACCCACTACCATTCTTCACAGGCTCACAATACAAGCTTTATAGTAATGGTGCTGACACGCTTGAGAACTATGTTAACTTCGGTTATCAAGGCACAAAGAACCCGTACGGTATTGATAACATTTACCGTATGTGTAAGCTGCGTCAAGTAGACGCTCAGTACCTTTACACAGTTACTCGCCCCGGTCAACAGGGCTACAACTGGGGTGTGGGTGCATTCGTGGGTACAATCCCGACTGCTATCTACCCGAACATTTGGTCACTGCAATTCCGATTGGGTGACTTCGTTGATGGACAAGACCGCATGTGGCTGCTGTACGGCGGCTCTAATGTAACTTGGACAGAACAAGGCACTGGTCAACAAAAGAGTGCTCAGATTAGCTTTGGTGCGCATGTATCACGCTCTGGTGAGTTGATGTACTACCGTCGATTCAACAGTACTTACGTGTACGCACGTGTGCAATTAGCAAGTCTGAGTGGTTGGCATCAAGTGCAACTAACGCAGGACGCGAACCACAACTGCACGATTACAGTTGATAAAGGTACGCCGAATGAACAGTCAGCTTCGTGCTCATTGAAGCTGTGGGGTAAACAGTTTGACAGTGTATTATTCAACTGTGGCCCTGCGTGTGTGGGTACGACTGGCGTCCCTATTACTGATGTTTACGACAAGTCGTGGATTGGTAACATTGACATCCGTCGTTTCTACATCGACACACACGGCACATTCAACGAGAACGTTATTCCGCGCTACTACGAGCAACCTTATCTGAACCTTGAGATTCAGGCTGAGGGTAGCAATACGTGGCAGGATGTATCGAGTTCTCTGGTGAACTGGCCGCATGAGCAGGATAACCGCCGTTGTATTTACACGTTGCCCGATGTACCTGATGGTCAGTACTTTATCCGGTACAAGACCAACTATGGTGTGAGTAACACGCTACCAGTGCGCATCAAGGGCGACATTAGCCGCAAGACTGAGTTGTATTCTGACTTCTCTAACTTGATTGAAATGCGTGAGAACTGGCTCGTTGCACATAAGCAATGGGGTGGTACTGGCGTTGTTGGCAACCAAACTGCACTGCTGAATGGTGGTGTGGTGCGTGAGAACGTTGAGGTTTACCCTGACTACTCTGATGTGGCAAATGCTGTGAAAGGTGTGCTACGTCTACGTGGTCATGGTACGTACTACGATGGTGATGTCATCGGTGTTGACCGTATCGGACACCCTGCCCCTGATGGTCGTAAGACTGAGGTAGGTGCAGCACTGGTTACACGTGAGTACTTAGGGCCGGGCAGTTTCCGCTGTAAGTTGCGCTCTCCGTACCGGAAAGGTGCAGCGACAGCCTTGTGGACATTCCACTATGAGGAAATCTACGAGAACGACCCACGTTGGCAGAGCTTCTTGGACGAGGGCTTACACGCTCAAGGTAATGAGGACGATGGTTACTACATTGTACGTAACCACGAGATTGACATCGAGTACCCAACCGCATTGAAAGATGCGGTGGATATGGAGGATGTATCGGCTGATAAAGCGCGTCTGAACACTTGGGAGGGTGAGCTGCGTACTTGGGATTTACCAGAGAGTGACCCGAACTACTTCTCTGAATACACTGACTTCTTCGAGAAGTGGGTAGATGAGGCGTTGAGTGACGGTAAGTGGCACGAGATTCGTTTCGACTGGCATACTGGCGAACAGAACCCACCAGCAGGGAAACCTGCGAAACGTGTGGACTTCTACGTTGACGGCGTGTTGAAATGGACTAACACCACACACATCCCTGACATTCCGGGTCGTCTATGGATTGCCCTTTGGTATCCACGCGCACCGGGCAACCGTTGGGCTGGACACAGTGCCGACTACATTTACGACTCGATTGACGTTGACTACTTCCACTACATCCCGTTCCCAGATGAACCAGTGCGCCAGTTAGGTGAAACATACCCTGCTGACGTATGGCGAGACTGGAAGTGGGAGAACTTCTTCTCCGGTTTCTATAACGAGCTACCACCACCATATGAGCTACCTAAGCCGTATGATGATGACATGCCAAAAGATGCCGATGGAACGTGGTTGCCAACGTCGTATCTAGCCGCTGGTAAGAACCCACCACAGTACATCACACCGTACCGATTGGAATGGCGTAATGACCGTAAATTGCAAGGCTCAGGAAATGGTGAATTCCAGTTCTTGAACTTAGTGCAAGGCGCTCGTTACAAGATGACAATCAAGGTGGCACGTACTACAACGCAAGCCGCTGGTTTGCAGTTGGTGACGTTCGAGCCGGGCAACGATGTAACTGACATCCCAATGTTCGAGGGTGACACCTATGAGTTGACTTTCATTGCGCAGAGCCAACAACGGGTAGCCTTGCGTCGTAACACAACAAACAATAAATACGAGGGTCTGACTGACATCCGGTTAGAGCGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d40d72012db3d4ab30d77f1387a1f6cb5fc73c03245ca612a8b09937e467c0d8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2901
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Vibrio parahaemolyticus phage VP46 isolated from sea water Qiao,H., Xu,X.L., Fei,W.B., Huang,J., Cong,Y., Fu,Y.M., Zhou,S.X., Mandeville,R., Wang,W.B. and Sheng,C.J. 2019-06-06 — GenBank