Protein

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Genbank accession
QQO38424.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MTTITVGTPVTAPITPGRDDSNVWPTHIAKYGKGGFEVVDAIQDRDLITDERREDKAVLVRSAANGKPALFEYSNGNWNEIPLEGSSSNGMTFKDDLFTTDNVDTATFESSSVKEINDAGTSVSVTPFTTYTDERTSGTTDEGGQTYVPVRANKVSLMSPLQMFSDPNEELGVVMEIQHDAFEAKRADGYLAYIGYPIEIIAQPEAENYHAKGKIWPTDLVVDSQGTSIAINKAQKTVGIQEGDNLDPNVTGGADFLVAYRISLAGVAPDEGRVRIYLAQGQQFDESSDIVVDVDGQALAAEKHYKAGDTLGDLEVVGVLNAKGLTNLTMHVVHTFTTDNIMINERAKGISGIMVQALDENSKTGQALVQYELDTRQVIEFSREWLGQKRMSFDSVVNHNSKRQTGAAGQGISLADGLHFYNPHPAATEVKDGQLIISDDGSNICDFSLGKFFSTAETVALRGKQVDVTLEVNNSTNGWNLYLLKWTGAPDKYTKELYKTRDGGGMPIWEDGWGVSDVKFISEDVTSGTHAVTKTFTVPQDANNYAVIVAPVEAEIPMTLKVSKFELDVVNPFYMYEMYQSNKLDEVHLRASEEFLETIQDNQGLGGLRYTINTAADGLPMPCGKVHKGRADITLDDTVNTVAGSGASGGEGALKFMAEGTATINTELRIWSEQAKGTNSVVTFWWVIIAANGTESKILKSETSFNIPGGSQAVYTLKPFELLVSPGDRIALKASADKADGAFIESVSPSKPMVDVKINFKELLATTADDPLSGLDLSGFDDVLQAPIILTKTVVNRSSIDIPFEVPDGADLVVLGAVKEAVSGIIEPVDDLHYSYNTLTNILTVSFGEVATVQLTLGLYM
Physico‐chemical
properties
protein length:861 AA
molecular weight: 93163,19570 Da
isoelectric point:4,57334
aromaticity:0,07782
hydropathy:-0,20093

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQO38424.1
1 861
Domain Start End Length (AA) Confidence
N-terminal 1 198 198 0,9557
Central domain 199 397 200 0,1020
C-terminal 398 861 463 0,7326
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-198
Central
199-397
C-terminal
398-861

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPG01
[NCBI] 		2798882 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO38424.1 [NCBI]
Genbank nucleotide accession
MW398869.1 [NCBI]
CDS location
range 32165 -> 34750
strand -
CDS
ATGACAACAATAACTGTAGGTACTCCAGTTACCGCCCCGATTACTCCGGGGCGTGATGACTCTAATGTGTGGCCTACCCATATTGCAAAATACGGTAAAGGTGGTTTTGAAGTAGTAGACGCTATCCAAGACCGCGACTTAATTACCGACGAAAGACGAGAAGATAAAGCAGTACTAGTAAGGTCTGCTGCAAACGGTAAACCAGCGCTATTCGAATATTCTAATGGTAACTGGAATGAAATCCCATTAGAAGGTAGTTCTAGTAACGGCATGACCTTTAAGGACGACCTCTTTACTACCGATAATGTCGATACTGCTACATTCGAGAGCTCTTCCGTAAAAGAGATTAATGATGCAGGTACTAGCGTGTCCGTTACGCCATTCACTACCTATACTGATGAGCGTACTAGCGGAACTACTGACGAAGGCGGACAAACCTACGTTCCAGTAAGAGCTAATAAAGTATCCCTAATGTCCCCATTACAAATGTTCTCAGACCCTAATGAGGAATTAGGTGTAGTAATGGAAATTCAGCACGACGCATTCGAAGCTAAACGTGCTGACGGATACCTAGCATATATTGGCTACCCTATTGAGATTATCGCACAACCAGAAGCAGAGAATTACCATGCTAAGGGTAAGATATGGCCTACCGACTTAGTGGTAGATAGTCAAGGTACTTCTATTGCTATCAATAAAGCACAGAAAACCGTGGGTATCCAAGAAGGTGATAACCTAGACCCTAACGTTACAGGTGGGGCTGACTTCCTAGTAGCATATCGCATATCTCTAGCAGGTGTTGCGCCAGACGAAGGTAGAGTTCGCATCTATCTAGCTCAGGGACAGCAGTTCGATGAGTCTTCTGATATTGTAGTAGATGTCGACGGTCAAGCACTAGCAGCAGAAAAACACTATAAAGCAGGGGATACTCTAGGGGACTTGGAAGTAGTTGGAGTACTAAATGCCAAAGGCTTAACAAACCTAACAATGCACGTAGTACATACCTTTACTACTGATAACATCATGATTAATGAGAGGGCTAAAGGAATCTCAGGTATTATGGTTCAAGCTCTTGACGAAAACAGTAAGACAGGTCAAGCACTAGTACAATACGAGTTAGATACTAGACAAGTTATTGAGTTCTCTAGAGAATGGCTTGGTCAGAAGAGAATGAGCTTTGACAGTGTAGTAAATCATAACTCTAAAAGACAAACCGGAGCAGCTGGACAGGGTATATCTCTTGCCGACGGATTACATTTCTATAATCCACACCCTGCGGCAACTGAAGTAAAAGATGGGCAATTAATCATTAGTGATGATGGCTCTAACATCTGTGACTTTAGCTTAGGTAAGTTCTTCAGTACAGCGGAAACAGTGGCTCTGCGTGGTAAACAAGTAGACGTTACACTAGAGGTTAATAATAGCACTAACGGCTGGAACTTGTATCTATTAAAATGGACAGGAGCTCCAGATAAGTACACCAAAGAACTCTATAAAACTAGAGATGGTGGTGGTATGCCTATTTGGGAAGATGGTTGGGGTGTAAGTGACGTTAAGTTCATCTCAGAAGACGTTACATCAGGAACACACGCAGTAACTAAGACGTTTACAGTACCACAAGATGCTAATAACTACGCTGTAATAGTTGCGCCAGTTGAAGCCGAAATCCCAATGACTCTTAAGGTATCCAAGTTCGAATTAGATGTAGTAAATCCATTCTATATGTATGAGATGTATCAATCAAATAAGTTAGACGAAGTACACTTGAGAGCCAGCGAAGAGTTCCTAGAAACTATCCAAGATAACCAAGGACTTGGTGGGCTTAGATATACTATCAATACTGCTGCGGATGGACTACCAATGCCTTGTGGTAAAGTTCATAAAGGTAGAGCAGACATTACTTTAGACGATACAGTAAATACTGTTGCTGGTTCTGGGGCTAGTGGTGGTGAGGGTGCTCTTAAGTTCATGGCAGAAGGTACGGCTACTATTAATACAGAGCTACGTATCTGGTCTGAACAAGCTAAAGGTACTAACTCTGTAGTAACTTTCTGGTGGGTTATTATTGCGGCCAATGGAACAGAGTCTAAAATACTTAAATCGGAAACATCATTCAATATTCCTGGTGGTTCTCAAGCAGTTTATACCTTGAAGCCTTTTGAGCTGTTAGTATCTCCTGGTGACAGAATTGCCCTTAAAGCATCTGCTGACAAAGCTGATGGTGCTTTCATTGAGTCTGTGTCCCCAAGCAAACCAATGGTAGACGTTAAAATCAACTTCAAGGAGTTACTGGCTACAACAGCAGATGACCCCCTATCTGGACTAGATTTAAGTGGCTTCGATGATGTGTTACAAGCGCCAATAATTTTAACTAAGACTGTTGTTAACAGAAGCTCTATAGATATTCCTTTCGAAGTACCAGATGGGGCGGACTTAGTAGTACTTGGTGCAGTAAAAGAAGCAGTCTCAGGGATTATTGAACCTGTAGACGACCTACATTACTCTTACAATACGCTTACAAATATACTAACTGTTTCCTTTGGTGAAGTAGCCACGGTACAGTTGACCTTAGGTCTTTACATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
750d9513bc479bb26f4be878a32cace0df4565d7bef081404d1426b3bd65a50c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4607
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VPG01 Kim,B.S. and Kim,M. 2012-06-15 — GenBank